PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065397.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 913aa MW: 100729 Da PI: 5.307

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5.1e-09	854	906	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +WT+ E+e+l+++v++l ++ Wk I + g gRt ++k++w++ XP_027065397.1 854 PWTKAEEEKLKEGVQRLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 906 8***************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence
MASEIPVPST MAWSWVIEAL SRSKQADTSL LIELCWHLCD SDIIKKAPEV SDDELGKNCR 60 EVVSLRILES LIVKGNQNKD KDAATVGQKL ELDPSNNCED VLRQISEMSA MDLTAVAPEM 120 LNGDVQSFIV HKRASLPKPA LQKLKDAILE GSHSILSSLK ERSGLTVTTQ CNDDIPVNGG 180 NSNVLAQRLE DCSINNKVTL PYGNAASPTH THDNMDDESQ ENLPDTNLLP AKRKTAAMRS 240 EIVEIQTDGD QTTLDDCCTS HVQATKKFKQ KANFTEDTVV QNAIAPTTHG PSTTLSEGVV 300 RYIEKEGCNS KKEVQCGSST PQNVDDDLEG NFPESNSLPA KRNRTAIAAE NSEGKTLKDQ 360 IPLGDGCDIH GEVVKKFKQD GNSMMDDIDE DTVASPVHGL MKFSSEGSVK HIEKEGCNLE 420 TEVQVGGVES NGSPHGDDDQ HYQLKRIAQS SHAFHQDHLV CDLQVPHDDA KVAELHAELD 480 GQNNSVDETD GHDQRFELQT ENATSLAMGV MEKNNSPENP VQNFEGNFQL SFGGSGSKDD 540 MQHNPDFDMT SDSDDYRDEK MDIALKKDAL LSSQCTYSQD SFATQAKYCV KCNKEGQLLV 600 CSSDTCQLAV HSSCLPSAAH FDGKGKFYCP FCAYSRAISE YMQVKRKASF ARKDLASFIG 660 VQTVCQQKKA TMKLGRESRN ELRKNEGNNS EDFVNKVSDS HCGVKMGNKH QSEPPLSCSS 720 DHSHSGEKVV SPSDRMPNTL VSGNLERKYM EPQCQLLGVQ VEQPVVAHPV HGSDVDRKKA 780 HMADRNEGNA GAEGKKVSEI PESALPQEPV CGPISESSEE DNEKSVRSYS IRLRRPIKNY 840 TYPAIPQLRR KILPWTKAEE EKLKEGVQRL SSPHDRSIPW KQILEFGGDV FQRGRTTIDL 900 KDKWRNICKG GPR

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence

MASEIPVPST MAWSWVIEAL SRSKQADTSL LIELCWHLCD SDIIKKAPEV SDDELGKNCR  60
EVVSLRILES LIVKGNQNKD KDAATVGQKL ELDPSNNCED VLRQISEMSA MDLTAVAPEM  120
LNGDVQSFIV HKRASLPKPA LQKLKDAILE GSHSILSSLK ERSGLTVTTQ CNDDIPVNGG  180
NSNVLAQRLE DCSINNKVTL PYGNAASPTH THDNMDDESQ ENLPDTNLLP AKRKTAAMRS  240
EIVEIQTDGD QTTLDDCCTS HVQATKKFKQ KANFTEDTVV QNAIAPTTHG PSTTLSEGVV  300
RYIEKEGCNS KKEVQCGSST PQNVDDDLEG NFPESNSLPA KRNRTAIAAE NSEGKTLKDQ  360
IPLGDGCDIH GEVVKKFKQD GNSMMDDIDE DTVASPVHGL MKFSSEGSVK HIEKEGCNLE  420
TEVQVGGVES NGSPHGDDDQ HYQLKRIAQS SHAFHQDHLV CDLQVPHDDA KVAELHAELD  480
GQNNSVDETD GHDQRFELQT ENATSLAMGV MEKNNSPENP VQNFEGNFQL SFGGSGSKDD  540
MQHNPDFDMT SDSDDYRDEK MDIALKKDAL LSSQCTYSQD SFATQAKYCV KCNKEGQLLV  600
CSSDTCQLAV HSSCLPSAAH FDGKGKFYCP FCAYSRAISE YMQVKRKASF ARKDLASFIG  660
VQTVCQQKKA TMKLGRESRN ELRKNEGNNS EDFVNKVSDS HCGVKMGNKH QSEPPLSCSS  720
DHSHSGEKVV SPSDRMPNTL VSGNLERKYM EPQCQLLGVQ VEQPVVAHPV HGSDVDRKKA  780
HMADRNEGNA GAEGKKVSEI PESALPQEPV CGPISESSEE DNEKSVRSYS IRLRRPIKNY  840
TYPAIPQLRR KILPWTKAEE EKLKEGVQRL SSPHDRSIPW KQILEFGGDV FQRGRTTIDL  900
KDKWRNICKG GPR