PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065328.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 1079aa    MW: 119784 Da    PI: 6.7115
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F +  +++
  XP_027065328.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLVAGDSVLFIR--DEK 217
                     99*****************************9445444.38************************************************4..466 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++++ r+
  XP_027065328.1 218 SQLLLGIKRA 227
                     6678888765 PP

2Auxin_resp121.37.5e-40252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s  rr++Gt++g+ dldpvrW+ S+Wr+L+
  XP_027065328.1 252 AAHAAANSSPFTIFYNPRASPSEFVIPFAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGIADLDPVRWKSSQWRNLQ 334
                     79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    
MKAPTNGYLA NSGEGERKAI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDSIPSYPNL PSKLICLLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQTWTFRH  180
IYRGQPKRHL LTTGWSVFVS SKRLVAGDSV LFIRDEKSQL LLGIKRANRQ LPALSSSVIS  240
SDSMHIGILA AAAHAAANSS PFTIFYNPRA SPSEFVIPFA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGIADL DPVRWKSSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKHPGFP DDESDMESVF KRGMPWLGDD LGLKDATSSV LPGLSLVQWM  420
NMQQNNQLSA AQSGIFPSAL NGNLSTEDHS KLLNFQSPAL AATNLQFGKT NQFNQQTNQL  480
QQTSLVGTQP QQLQQLLHSS VNSQQQQHPQ QHSIQLRQQP QLPQHQQQCP PHLQQPQQLQ  540
QQQNMMPLAS VNNGPSVATS QIPNQNLQQP ALYSQLQQQH LLTGNTQPQQ PASSNKSSLT  600
SLPQDVQYQQ LEHQNNLLQK TQQQQTPMLQ APLQTLQQNL IQRQQVQQTS QQNLSEQNLQ  660
LQLLQKLQQQ QQQQQLLSPL SNHLEPQLPQ QQQPLQQNRP FQQAPVAQQQ PSGNSFSTST  720
LLQSPQHPVN QLQGQNKSRI FVKAYSGPTD GDAPSCSTSP STNNCHVSSS KFPNRNQQGP  780
ITQAGESVID PSPILVHELQ SRSDVRVKHE LSGSKGAEQP KFRSNTEHLD AASSATSYCL  840
DTGGIQQNFP LPGLCLDSDV QSHSRSTLPF TSTVDSLAPD ALLSRGYDSG KDIQNVLSNY  900
GGSSRDIETE LSAAGFGVPN MSFKPGCSND VPITEAGVLN SGLWPNQTQR MRTYTKVQKR  960
GSVGRTIDVT RYKGYDELRH DLARMFGIEG QLEDTQRIEW KLVYVDHEND ILLVGDDPWE  1020
EFVSCVQSIK ILSSAEVQQM SLDGDLGNLP VPNQACSGTD SGNAWRGHYD DNSAASFNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein