PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027065328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ARF | ||||||||
Protein Properties | Length: 1079aa MW: 119784 Da PI: 6.7115 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.2e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F + +++ XP_027065328.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLVAGDSVLFIR--DEK 217 99*****************************9445444.38************************************************4..466 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l++++ r+ XP_027065328.1 218 SQLLLGIKRA 227 6678888765 PP | |||||||
2 | Auxin_resp | 121.3 | 7.5e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s rr++Gt++g+ dldpvrW+ S+Wr+L+ XP_027065328.1 252 AAHAAANSSPFTIFYNPRASPSEFVIPFAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGIADLDPVRWKSSQWRNLQ 334 79*******************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1079 aa Download sequence |
MKAPTNGYLA NSGEGERKAI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDSIPSYPNL PSKLICLLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQSR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQTWTFRH 180 IYRGQPKRHL LTTGWSVFVS SKRLVAGDSV LFIRDEKSQL LLGIKRANRQ LPALSSSVIS 240 SDSMHIGILA AAAHAAANSS PFTIFYNPRA SPSEFVIPFA KYNKAMYAQV SLGMRFRMMF 300 ETEESGVRRY MGTITGIADL DPVRWKSSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP 360 FYICPPPFFR PKFPKHPGFP DDESDMESVF KRGMPWLGDD LGLKDATSSV LPGLSLVQWM 420 NMQQNNQLSA AQSGIFPSAL NGNLSTEDHS KLLNFQSPAL AATNLQFGKT NQFNQQTNQL 480 QQTSLVGTQP QQLQQLLHSS VNSQQQQHPQ QHSIQLRQQP QLPQHQQQCP PHLQQPQQLQ 540 QQQNMMPLAS VNNGPSVATS QIPNQNLQQP ALYSQLQQQH LLTGNTQPQQ PASSNKSSLT 600 SLPQDVQYQQ LEHQNNLLQK TQQQQTPMLQ APLQTLQQNL IQRQQVQQTS QQNLSEQNLQ 660 LQLLQKLQQQ QQQQQLLSPL SNHLEPQLPQ QQQPLQQNRP FQQAPVAQQQ PSGNSFSTST 720 LLQSPQHPVN QLQGQNKSRI FVKAYSGPTD GDAPSCSTSP STNNCHVSSS KFPNRNQQGP 780 ITQAGESVID PSPILVHELQ SRSDVRVKHE LSGSKGAEQP KFRSNTEHLD AASSATSYCL 840 DTGGIQQNFP LPGLCLDSDV QSHSRSTLPF TSTVDSLAPD ALLSRGYDSG KDIQNVLSNY 900 GGSSRDIETE LSAAGFGVPN MSFKPGCSND VPITEAGVLN SGLWPNQTQR MRTYTKVQKR 960 GSVGRTIDVT RYKGYDELRH DLARMFGIEG QLEDTQRIEW KLVYVDHEND ILLVGDDPWE 1020 EFVSCVQSIK ILSSAEVQQM SLDGDLGNLP VPNQACSGTD SGNAWRGHYD DNSAASFNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |