PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065274.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 917aa MW: 101713 Da PI: 6.8967

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.9	1.9e-18	332	432	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027065274.1 332 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVQGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 424 99************************555567778***********99899999999.*******************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_027065274.1 425 LLMGFRKA 432 88888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence
MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW 60 RECTTCGKRL HCGCVASSSW LELLDSGGVN CISCSESHGI CSTLTGEKNK DCRVFSADDG 120 GGKQFTTVGS QSNVGITDKM KLVQFGDDAG SSDQSQLFLS QTDDRIESLG QRKMKENFLT 180 SGEFGSPFLS VLNQTSVEAA QNAQLNEYKE YMPIKDTHGS SVQTNLTISP PATSGDKNFL 240 PAVVAEERPL NKKSSSFSQG SRSRHLLPKP VKSIMAAGLE ANVSSLTQLR VARPPVEGRI 300 KNQLLPRYWP RITDQELRQI SGDSNSTVVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP 360 ISQPEGLPLR IQDVQGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD 420 PEGKLLMGFR KASLMQDNKH LSSIPKGSFS SEPFFLPGAD NLHSANSQSA LLDSVKGSGV 480 FPLSALSKHF SAVEFGWHIA EMNGEKTLDG IFPSPMLVPE RKRSRNIGSK SKRLLIDSQD 540 AFELKLSWEE LQDMLCPPPC VKPSTVAIED HEFEEYDQPP VFGKKSIFTM RQSGEQEQWA 600 QCDSCLKWRR LPVNVLLPPK WTCQEHTWAL SRPSCSGPED LSPHELESLL KMSKELKKQK 660 IASGLKSAHE HESSDPDGLG NSKAVRGDTS GTSAASIATT TKHPRHRPGC SCIVCIQPPS 720 GKGKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAEIA QRNKFDWVSK EEAEVESYQQ 780 LVIPHDSLEN HKRLGSESEF LSQSNKQSEK LEEIGKEQLD LNCHPDRENL QQSSSRVSMV 840 SLLQEASLPL QTYLKQNGLT SLVSDQRVSS GSNVLLPQVT RESELQFDED QCLSHEIQEQ 900 EVKEELSETD QAGNDPS

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence

MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW  60
RECTTCGKRL HCGCVASSSW LELLDSGGVN CISCSESHGI CSTLTGEKNK DCRVFSADDG  120
GGKQFTTVGS QSNVGITDKM KLVQFGDDAG SSDQSQLFLS QTDDRIESLG QRKMKENFLT  180
SGEFGSPFLS VLNQTSVEAA QNAQLNEYKE YMPIKDTHGS SVQTNLTISP PATSGDKNFL  240
PAVVAEERPL NKKSSSFSQG SRSRHLLPKP VKSIMAAGLE ANVSSLTQLR VARPPVEGRI  300
KNQLLPRYWP RITDQELRQI SGDSNSTVVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP  360
ISQPEGLPLR IQDVQGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD  420
PEGKLLMGFR KASLMQDNKH LSSIPKGSFS SEPFFLPGAD NLHSANSQSA LLDSVKGSGV  480
FPLSALSKHF SAVEFGWHIA EMNGEKTLDG IFPSPMLVPE RKRSRNIGSK SKRLLIDSQD  540
AFELKLSWEE LQDMLCPPPC VKPSTVAIED HEFEEYDQPP VFGKKSIFTM RQSGEQEQWA  600
QCDSCLKWRR LPVNVLLPPK WTCQEHTWAL SRPSCSGPED LSPHELESLL KMSKELKKQK  660
IASGLKSAHE HESSDPDGLG NSKAVRGDTS GTSAASIATT TKHPRHRPGC SCIVCIQPPS  720
GKGKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAEIA QRNKFDWVSK EEAEVESYQQ  780
LVIPHDSLEN HKRLGSESEF LSQSNKQSEK LEEIGKEQLD LNCHPDRENL QQSSSRVSMV  840
SLLQEASLPL QTYLKQNGLT SLVSDQRVSS GSNVLLPQVT RESELQFDED QCLSHEIQEQ  900
EVKEELSETD QAGNDPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	738	749	KRRFKTLMMRKK
2	738	751	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein