PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065273.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 925aa MW: 102579 Da PI: 6.8191

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.8	1.9e-18	332	432	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027065273.1 332 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVQGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 424 99************************555567778***********99899999999.*******************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_027065273.1 425 LLMGFRKA 432 88888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence
MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW 60 RECTTCGKRL HCGCVASSSW LELLDSGGVN CISCSESHGI CSTLTGEKNK DCRVFSADDG 120 GGKQFTTVGS QSNVGITDKM KLVQFGDDAG SSDQSQLFLS QTDDRIESLG QRKMKENFLT 180 SGEFGSPFLS VLNQTSVEAA QNAQLNEYKE YMPIKDTHGS SVQTNLTISP PATSGDKNFL 240 PAVVAEERPL NKKSSSFSQG SRSRHLLPKP VKSIMAAGLE ANVSSLTQLR VARPPVEGRI 300 KNQLLPRYWP RITDQELRQI SGDSNSTVVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP 360 ISQPEGLPLR IQDVQGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD 420 PEGKLLMGFR KASLMQTCSD FPSQDNKHLS SIPKGSFSSE PFFLPGADNL HSANSQSALL 480 DSVKGSGVFP LSALSKHFSA VEFGWHIAEM NGEKTLDGIF PSPMLVPERK RSRNIGSKSK 540 RLLIDSQDAF ELKLSWEELQ DMLCPPPCVK PSTVAIEDHE FEEYDQPPVF GKKSIFTMRQ 600 SGEQEQWAQC DSCLKWRRLP VNVLLPPKWT CQEHTWALSR PSCSGPEDLS PHELESLLKM 660 SKELKKQKIA SGLKSAHEHE SSDPDGLGNS KAVRGDTSGT SAASIATTTK HPRHRPGCSC 720 IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NKFDWVSKEE 780 AEVESYQQLV IPHDSLENHK RLGSESEFLS QSNKQSEKLE EIGKEQLDLN CHPDRENLQQ 840 SSSRVSMVSL LQEASLPLQT YLKQNGLTSL VSDQRVSSGS NVLLPQVTRE SELQFDEDQC 900 LSHEIQEQEV KEELSETDQA GNDPS

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence

MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW  60
RECTTCGKRL HCGCVASSSW LELLDSGGVN CISCSESHGI CSTLTGEKNK DCRVFSADDG  120
GGKQFTTVGS QSNVGITDKM KLVQFGDDAG SSDQSQLFLS QTDDRIESLG QRKMKENFLT  180
SGEFGSPFLS VLNQTSVEAA QNAQLNEYKE YMPIKDTHGS SVQTNLTISP PATSGDKNFL  240
PAVVAEERPL NKKSSSFSQG SRSRHLLPKP VKSIMAAGLE ANVSSLTQLR VARPPVEGRI  300
KNQLLPRYWP RITDQELRQI SGDSNSTVVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP  360
ISQPEGLPLR IQDVQGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD  420
PEGKLLMGFR KASLMQTCSD FPSQDNKHLS SIPKGSFSSE PFFLPGADNL HSANSQSALL  480
DSVKGSGVFP LSALSKHFSA VEFGWHIAEM NGEKTLDGIF PSPMLVPERK RSRNIGSKSK  540
RLLIDSQDAF ELKLSWEELQ DMLCPPPCVK PSTVAIEDHE FEEYDQPPVF GKKSIFTMRQ  600
SGEQEQWAQC DSCLKWRRLP VNVLLPPKWT CQEHTWALSR PSCSGPEDLS PHELESLLKM  660
SKELKKQKIA SGLKSAHEHE SSDPDGLGNS KAVRGDTSGT SAASIATTTK HPRHRPGCSC  720
IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NKFDWVSKEE  780
AEVESYQQLV IPHDSLENHK RLGSESEFLS QSNKQSEKLE EIGKEQLDLN CHPDRENLQQ  840
SSSRVSMVSL LQEASLPLQT YLKQNGLTSL VSDQRVSSGS NVLLPQVTRE SELQFDEDQC  900
LSHEIQEQEV KEELSETDQA GNDPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	746	757	KRRFKTLMMRKK
2	746	759	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein