PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065247.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 520aa MW: 59297.7 Da PI: 7.0888

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	92	114	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++ G+C+ G+rC+F+Hgp XP_027065247.1 92 VPCYYYYN-GFCSKGERCSFMHGP 114 68****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MEKMEQVLQK KNTDCVYFLA SPLTCKKGIE CEYRHSEIAR LNPRDCWYWL AGSCVNPTCA 60 FRHPPLDGRT ETASESASAD HQSAITVNKT NVPCYYYYNG FCSKGERCSF MHGPEENTYT 120 WRSSKQSSAI ADGPPLEEKI STGTGRGPVP AETHSARTEP KSLAGTKVIP QRESRQFTPN 180 NAAEHCQPAP NDAAEKSVYP QISVSSSEEA ATIRSNFQIH TEGLVHRRSL ESTDQGFDDE 240 FDNHNRQEVD NHIEREEWLE SSPGFDVLVN DRSEDLGYED EALYLPHRDM EDRECNGQHL 300 AYEYEDNIEY DPAYPDIRTS FEQGIPNWYH HVEEDVCNVY QKTPFYARER VLDHPLPRKR 360 KLLQTELAGM DLRDYLKKRR MPESEDTKYF SGRPHFSHLT GKITEKASTG GRGHLHGRLA 420 SKVEFADKSR IETENCSSST YQHGRTRRPS INRSRLHTKE RKQGKRQIVS GVPRKAVPRK 480 RKSARESTVF TGPKTLAQIK EEKEKALCGR TGEGHFSGDA

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MEKMEQVLQK KNTDCVYFLA SPLTCKKGIE CEYRHSEIAR LNPRDCWYWL AGSCVNPTCA  60
FRHPPLDGRT ETASESASAD HQSAITVNKT NVPCYYYYNG FCSKGERCSF MHGPEENTYT  120
WRSSKQSSAI ADGPPLEEKI STGTGRGPVP AETHSARTEP KSLAGTKVIP QRESRQFTPN  180
NAAEHCQPAP NDAAEKSVYP QISVSSSEEA ATIRSNFQIH TEGLVHRRSL ESTDQGFDDE  240
FDNHNRQEVD NHIEREEWLE SSPGFDVLVN DRSEDLGYED EALYLPHRDM EDRECNGQHL  300
AYEYEDNIEY DPAYPDIRTS FEQGIPNWYH HVEEDVCNVY QKTPFYARER VLDHPLPRKR  360
KLLQTELAGM DLRDYLKKRR MPESEDTKYF SGRPHFSHLT GKITEKASTG GRGHLHGRLA  420
SKVEFADKSR IETENCSSST YQHGRTRRPS INRSRLHTKE RKQGKRQIVS GVPRKAVPRK  480
RKSARESTVF TGPKTLAQIK EEKEKALCGR TGEGHFSGDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	362	PRKRKL
2	358	380	RKRKLLQTELAGMDLRDYLKKRR
3	359	381	RKRKLLQTELAGMDLRDYLKKRR
4	479	505	RKRKSARESTVFTGPKTLAQIKEEKEK