PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065220.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 362aa MW: 41031.8 Da PI: 6.8841

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.1e-15	43	102	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_027065220.1 43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 102 57*****************999955656446***********************98 PP
2	AP2	52.2	1.5e-16	145	196	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_027065220.1 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 196 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MTKISQQNQR NNSNLGNGIN NSAIKVKRTR KTVPRDSPPQ RSSIYRGVTR HRWTGRYEAH 60 LWDKNCWNES QNKKGRQVYL GAYDDEEAAA HAYDLAALKY WGQDTTLNFP LATYQKELKE 120 MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ 180 EEAAIAYDMA AIEYRGLNAV TNFDLSRYIK WLRPNATNST TTSAAIAEPN PNVDTNFMPT 240 PDQMLASSSI YHPQTEQQPQ PLDITTDITL NQSRPASATS ALGLLLQSSK FKEMMEMTLA 300 AECPVALTTP ESEPTQCSIP DDAQSFFTTP DMGSYIDQSQ EDIFSELINP FMQPMLQFDF 360 DV

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MTKISQQNQR NNSNLGNGIN NSAIKVKRTR KTVPRDSPPQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQVYL GAYDDEEAAA HAYDLAALKY WGQDTTLNFP LATYQKELKE  120
MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAIAYDMA AIEYRGLNAV TNFDLSRYIK WLRPNATNST TTSAAIAEPN PNVDTNFMPT  240
PDQMLASSSI YHPQTEQQPQ PLDITTDITL NQSRPASATS ALGLLLQSSK FKEMMEMTLA  300
AECPVALTTP ESEPTQCSIP DDAQSFFTTP DMGSYIDQSQ EDIFSELINP FMQPMLQFDF  360
DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-103	AP2 family protein