PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065159.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 291aa MW: 30223.4 Da PI: 9.8855

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.3e-07	36	60	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H XP_027065159.1 36 KSKPCTKFFSTAGCPFGESCHFLHH 60 7789********************6 PP
2	zf-CCCH	27.5	5.3e-09	99	123	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt++C+ + Ck+Gd+C+FaHg XP_027065159.1 99 KTKICNKYNTAEGCKFGDKCHFAHG 123 89**********************9 PP
3	zf-CCCH	31.9	2.3e-10	258	282	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C + +rC+FaHg XP_027065159.1 258 YKTKLCENFAK-GSCTFAERCHFAHG 282 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MDIRKRNRTD SNLNANGGFK KSKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHH 60 VPGGYNAVAQ MMNLPPAPGP RGAAAPTSVP NGAGSATVKT KICNKYNTAE GCKFGDKCHF 120 AHGDWELGKP IAPSPPHTMS AIPGRFGGRM EPVVPGPAAS FGASATAKIS VEASLAGAII 180 GKSGVNSKQI CRQTGVKLAI REHDSNPNLR NIELEGTFEQ IQQASAMVRE LIASLGPVGG 240 PGRAPAIPGG PAPPGSNYKT KLCENFAKGS CTFAERCHFA HGAAELRKSG V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	1e-60	C3H family protein