PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064993.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 324aa MW: 36709.8 Da PI: 7.0979

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.4e-12	187	212	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd CkF+H+ XP_027064993.1 187 YQPDICKDYKETGYCGYGDACKFMHD 212 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MADSGEAPQQ KQEVCNFFKK PSKGKNIRKR PAVDEDNADE DSKDESSVIF NKKKPAAADN 60 KLHFSTGSSK RSIEAETNAD SKTPFFHFES SKEIQVHNDS RATATLETET EFSRDARAIR 120 ERVLKQAEEA LQGKGTSDEK VYKGMHGYTD YKAGFRREHT VSGEKAGGSH GPLRASAHIR 180 VSARFDYQPD ICKDYKETGY CGYGDACKFM HDRGDYKSGW QLEKEWDEAE KIRKRNLALG 240 IDNADEDTAE KSDEDEDDAL PFACFICRQP FVDPVVTKCK HYFCEHCALK HHARNKKCFV 300 CNQPTMGIFN TAFEIRKRMS AEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-167	C3H family protein