PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027064982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 586aa MW: 65291.7 Da PI: 6.3123 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 425 | 6e-130 | 216 | 585 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ecA+a+ +++le+ ++l+++ + +s +g+p+qRl ay++e+L ar s++++y++l+++e + ++ l+++++++e++P+lkf++ XP_027064982.1 216 LKQLLMECARAFYENELENFEKLVETARGAVSITGEPIQRLGAYMLEGLIARKEASGTNIYRTLRCKEPE---GKDLLSYMHILYEICPYLKFGY 307 689******************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++aN aI ea +e+r+Hi+Df+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + e l ++g+rLa + e++++p+ef++ v + XP_027064982.1 308 MAANGAIAEACRNEDRIHIVDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSQyaRGEGLAAVGKRLAAISEKFNIPVEFHA-VPVFAPE 401 *******************************************************999999**************************.6888999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ ++L ++pgEalaVn+ lqlh+++desv+++++rd +L++vk l+Pkvv++veqe+++n+++Fl rf e+leyysa+f+s+++++pr+ +eri XP_027064982.1 402 VTRDMLCIRPGEALAVNFPLQLHHTPDESVDVTNPRDGLLRMVKALNPKVVTLVEQESKTNTAPFLPRFWETLEYYSAIFESIDVTMPRDRKERI 496 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vE+++l+r+ivn++aceg+er+erhe ++kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e +g+++lgWkdr+L+s+SaW XP_027064982.1 497 NVEQHCLARDIVNIIACEGKERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLVEADGAMLLGWKDRNLISASAW 585 **********************************************************9999.66************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence |
MDSHQFFGYS VAGADISSYP SYSTAPSVPN RLYGSLKFEL RNSPNSPFLS HFDSETLTTL 60 SDGQEQHSST ENLSEASPSC NSSLNYTSSC YQQLSSSPDS SQEKPQISSG GTTLFQNPNN 120 GHNIKYTLQQ LETALMGPDE EATTSAPSVG ENKGPQASGQ KSRALSQENQ PLGSQIIHSQ 180 PSYALHLRKS GNELPMEKRL RAIEELSLKG IPPTNLKQLL MECARAFYEN ELENFEKLVE 240 TARGAVSITG EPIQRLGAYM LEGLIARKEA SGTNIYRTLR CKEPEGKDLL SYMHILYEIC 300 PYLKFGYMAA NGAIAEACRN EDRIHIVDFQ IAQGTQWMTL LQALAARPSG APHVRITGID 360 DPVSQYARGE GLAAVGKRLA AISEKFNIPV EFHAVPVFAP EVTRDMLCIR PGEALAVNFP 420 LQLHHTPDES VDVTNPRDGL LRMVKALNPK VVTLVEQESK TNTAPFLPRF WETLEYYSAI 480 FESIDVTMPR DRKERINVEQ HCLARDIVNI IACEGKERVE RHELFGKWKS RFTMAGFRQY 540 PLSSYVNSVI RGLLRCYSEH YTLVEADGAM LLGWKDRNLI SASAWH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.1 | 1e-176 | GRAS family protein |