PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064634.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 412aa MW: 44859.2 Da PI: 5.3138

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.4e-06	46	88	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++ +++ C + + lC++C +H g H+++ XP_027064634.1 46 LVCERCNLQPAFVRCIEEKISLCPNCDWLGHGGsntgstHKRQ 88 68*****************************558888888875 PP
2	CCT	62.3	1.6e-21	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ XP_027064634.1 355 RSNAVLRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 398 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGYMCDFCGE QRSIVYCRSD AASLCLSCDC NVHSANALSR RHSRTLVCER CNLQPAFVRC 60 IEEKISLCPN CDWLGHGGSN TGSTHKRQAV SCYSGCPSAA ELSTIWPFFL DFPLVGDSKC 120 EQIMGSMSIN EVSRDSQGAQ GKKNIQDASV AVGVTNIQNV DKSTAWTGSS MLPYDAKLQN 180 IELPAASTCA GSPKLSCFGA KGQTVCEDDS FYENFNMDEV DLSIENYDEL FGAALDNPEK 240 LFENDDIDGL FGMEISGADS NCQDAHLMEG SSMGRINGIQ PACSTAASAD SMMSCKTEPN 300 ICFARQAHSS LSFSGLTGES SAGDYQDCGA SSFLLMGEPP WCPPCPESSN PASSRSNAVL 360 RYKEKKKTRK FEKKVRYASR KARADVRRRV KGRFVKAGDA YDYDPMTPTR SY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGYMCDFCGE QRSIVYCRSD AASLCLSCDC NVHSANALSR RHSRTLVCER CNLQPAFVRC  60
IEEKISLCPN CDWLGHGGSN TGSTHKRQAV SCYSGCPSAA ELSTIWPFFL DFPLVGDSKC  120
EQIMGSMSIN EVSRDSQGAQ GKKNIQDASV AVGVTNIQNV DKSTAWTGSS MLPYDAKLQN  180
IELPAASTCA GSPKLSCFGA KGQTVCEDDS FYENFNMDEV DLSIENYDEL FGAALDNPEK  240
LFENDDIDGL FGMEISGADS NCQDAHLMEG SSMGRINGIQ PACSTAASAD SMMSCKTEPN  300
ICFARQAHSS LSFSGLTGES SAGDYQDCGA SSFLLMGEPP WCPPCPESSN PASSRSNAVL  360
RYKEKKKTRK FEKKVRYASR KARADVRRRV KGRFVKAGDA YDYDPMTPTR SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-118	CO-like family protein