PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027064392.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 544aa    MW: 60850.3 Da    PI: 6.0339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027064392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.18.7e-1391745441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+av+++d+   q+l+++l++++s +g+p+qRl ay++e+L a+la s+s++yk+l+++e +   s e l+++++++ev+P++kf++
  XP_027064392.1 174 LKQILIACAKAVADNDTLISQWLMSELRQMVSVSGEPIQRLGAYMLEGLVAKLAASGSSIYKSLRCKEPA---SFELLSYMHILYEVCPYFKFGY 265
                     5789*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+++Ae+++vpfef++ +a +  +
  XP_027064392.1 266 MSANGAIAEAMKDENRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLSIVGQRLSRLAESFKVPFEFHA-AAMSGCE 359
                     ******************************************************998899999************************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L+lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr+++eri
  XP_027064392.1 360 VQPEDLGIQPGEALAVNFAFVLHHMPDESVSTENPRDRLLRLVKSLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRDHKERI 454
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vnv+aceg er+erhe l+kW++r+++aGF+p+pl + +++++k ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+
  XP_027064392.1 455 NVEQHCLARDVVNVIACEGPERVERHEVLGKWKSRFRMAGFSPYPLCSLVNATIKKLLENYSDK-YRLEERDGALYLGWMNRDLVASCAWK 544
                     **************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQASQRPRKV GMPNTFFLNQ PLQKVESYFL PHIQTFEPQL SCNNSRYGPS CPIQISHDRY  60
CTLESSSLTG NHTIYNSPST VSFSPIGSPV SQQESLHMTD PVQSPETNYG SPLSGSCITN  120
DVNDLRHKLR ELENAMLGPD SDFFGACDNL LPINEGALEN SWRQMIEVIP RGDLKQILIA  180
CAKAVADNDT LISQWLMSEL RQMVSVSGEP IQRLGAYMLE GLVAKLAASG SSIYKSLRCK  240
EPASFELLSY MHILYEVCPY FKFGYMSANG AIAEAMKDEN RVHIIDFQIS QGSQWVTLIQ  300
AFAARPGGPP HIRITGIDDS TSAYARGGGL SIVGQRLSRL AESFKVPFEF HAAAMSGCEV  360
QPEDLGIQPG EALAVNFAFV LHHMPDESVS TENPRDRLLR LVKSLNPKVV TLVEQESNTN  420
TAAFFPRFLE TLDYYTAMFE SIDVTLPRDH KERINVEQHC LARDVVNVIA CEGPERVERH  480
EVLGKWKSRF RMAGFSPYPL CSLVNATIKK LLENYSDKYR LEERDGALYL GWMNRDLVAS  540
CAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein