PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064371.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 522aa MW: 56305.5 Da PI: 8.0693

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.5e-11	146	170	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ XP_027064371.1 146 GEKDCAYYMLTRTCKYGDSCKFDHP 170 7889********************8 PP
2	zf-CCCH	37	5.8e-12	197	222	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ XP_027064371.1 197 PGEPDCPFFMKTQRCKFGTRCKFNHP 222 5789*********************8 PP
3	zf-CCCH	39.4	1e-12	245	269	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_027064371.1 245 EPPCAFYMKTGQCKFGATCKFHHPK 269 79*********************96 PP
4	zf-CCCH	34.2	4.3e-11	321	344	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_027064371.1 321 EVDCPFYLKTGSCKYGQTCRYNHP 344 689********************9 PP
5	zf-CCCH	38.4	2.1e-12	406	431	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG+Ck+G rCkF+H+ XP_027064371.1 406 PGEAACDFYMKTGECKFGQRCKFHHP 431 57899********************8 PP
6	zf-CCCH	36.6	7.7e-12	465	486	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_027064371.1 465 CPYYMKTGTCKYGATCRFDHPP 486 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDASSL LGSSRIPGLD 60 AVSPTTTSKP ASSSSSWPGP PGVDVADPFL LATLKRSSSQ ALYHQTVFGA HNPIGQTEAW 120 FSTNPLAKRP RFESAGNLPI YPQRPGEKDC AYYMLTRTCK YGDSCKFDHP IWVPEGGIPD 180 WKEVPLVDTS EPLPERPGEP DCPFFMKTQR CKFGTRCKFN HPIEKITPLV ALETNSAVLP 240 ERPSEPPCAF YMKTGQCKFG ATCKFHHPKD LQISTAGQEN SFGEQSKLST NETSGDFKAV 300 KPPVTPAMMH NTKGLPIRLG EVDCPFYLKT GSCKYGQTCR YNHPDRNGIS AINPPAAAIG 360 AAYIASPAPN LSIGIVNPAA SILQTFDPRL TQTTVGLAAA IYPQRPGEAA CDFYMKTGEC 420 KFGQRCKFHH PIDRSAPIIS GKETQQENVK LTRAGLPRRE GAIHCPYYMK TGTCKYGATC 480 RFDHPPPGEV LAMGTTAQGT WSPTGGEAEE GSSGPETGGE KQ

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDASSL LGSSRIPGLD  60
AVSPTTTSKP ASSSSSWPGP PGVDVADPFL LATLKRSSSQ ALYHQTVFGA HNPIGQTEAW  120
FSTNPLAKRP RFESAGNLPI YPQRPGEKDC AYYMLTRTCK YGDSCKFDHP IWVPEGGIPD  180
WKEVPLVDTS EPLPERPGEP DCPFFMKTQR CKFGTRCKFN HPIEKITPLV ALETNSAVLP  240
ERPSEPPCAF YMKTGQCKFG ATCKFHHPKD LQISTAGQEN SFGEQSKLST NETSGDFKAV  300
KPPVTPAMMH NTKGLPIRLG EVDCPFYLKT GSCKYGQTCR YNHPDRNGIS AINPPAAAIG  360
AAYIASPAPN LSIGIVNPAA SILQTFDPRL TQTTVGLAAA IYPQRPGEAA CDFYMKTGEC  420
KFGQRCKFHH PIDRSAPIIS GKETQQENVK LTRAGLPRRE GAIHCPYYMK TGTCKYGATC  480
RFDHPPPGEV LAMGTTAQGT WSPTGGEAEE GSSGPETGGE KQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-177	C3H family protein