PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027064370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 536aa MW: 58140.4 Da PI: 8.0701 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 172 | 196 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ XP_027064370.1 172 GEKDCAYYMLTRTCKYGDSCKFDHP 196 7889********************8 PP | |||||||
2 | zf-CCCH | 36.9 | 6e-12 | 223 | 248 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ XP_027064370.1 223 PGEPDCPFFMKTQRCKFGTRCKFNHP 248 5789*********************8 PP | |||||||
3 | zf-CCCH | 39.4 | 1e-12 | 271 | 295 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_027064370.1 271 EPPCAFYMKTGQCKFGATCKFHHPK 295 79*********************96 PP | |||||||
4 | zf-CCCH | 34.1 | 4.5e-11 | 347 | 370 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_027064370.1 347 EVDCPFYLKTGSCKYGQTCRYNHP 370 689********************9 PP | |||||||
5 | zf-CCCH | 38.3 | 2.2e-12 | 420 | 445 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG+Ck+G rCkF+H+ XP_027064370.1 420 PGEAACDFYMKTGECKFGQRCKFHHP 445 57899********************8 PP | |||||||
6 | zf-CCCH | 36.5 | 8e-12 | 479 | 500 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_027064370.1 479 CPYYMKTGTCKYGATCRFDHPP 500 ********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 536 aa Download sequence |
MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDASSL LGSSRYLTSS 60 DPLFSSSAAR LFSHSDSYSF RIPGLDAVSP TTTSKPASSS SSWPGPPGVD VADPFLLATL 120 KRSSSQALYH QTVFGAHNPI GQTEAWFSTN PLAKRPRFES AGNLPIYPQR PGEKDCAYYM 180 LTRTCKYGDS CKFDHPIWVP EGGIPDWKEV PLVDTSEPLP ERPGEPDCPF FMKTQRCKFG 240 TRCKFNHPIE KITPLVALET NSAVLPERPS EPPCAFYMKT GQCKFGATCK FHHPKDLQIS 300 TAGQENSFGE QSKLSTNETS GDFKAVKPPV TPAMMHNTKG LPIRLGEVDC PFYLKTGSCK 360 YGQTCRYNHP DRNGAAYIAS PAPNLSIGIV NPAASILQTF DPRLTQTTVG LAAAIYPQRP 420 GEAACDFYMK TGECKFGQRC KFHHPIDRSA PIISGKETQQ ENVKLTRAGL PRREGAIHCP 480 YYMKTGTCKY GATCRFDHPP PGEVLAMGTT AQGTWSPTGG EAEEGSSGPE TGGEKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-180 | C3H family protein |