PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027064369.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 545aa    MW: 58959.4 Da    PI: 8.0701
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027064369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-11172196226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCkyGd+CkF H+
  XP_027064369.1 172 GEKDCAYYMLTRTCKYGDSCKFDHP 196
                     7889********************8 PP

2zf-CCCH36.96.1e-12223248126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+ff++t  Ck+G rCkF+H+
  XP_027064369.1 223 PGEPDCPFFMKTQRCKFGTRCKFNHP 248
                     5789*********************8 PP

3zf-CCCH39.31e-12271295327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG+Ck+G++CkF+H++
  XP_027064369.1 271 EPPCAFYMKTGQCKFGATCKFHHPK 295
                     79*********************96 PP

4zf-CCCH34.14.5e-11347370326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+f+++tG CkyG +C+++H+
  XP_027064369.1 347 EVDCPFYLKTGSCKYGQTCRYNHP 370
                     689********************9 PP

5zf-CCCH38.32.2e-12429454126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG+Ck+G rCkF+H+
  XP_027064369.1 429 PGEAACDFYMKTGECKFGQRCKFHHP 454
                     57899********************8 PP

6zf-CCCH36.58.1e-12488509627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tGtCkyG++C+F H+p
  XP_027064369.1 488 CPYYMKTGTCKYGATCRFDHPP 509
                     ********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDASSL LGSSRYLTSS  60
DPLFSSSAAR LFSHSDSYSF RIPGLDAVSP TTTSKPASSS SSWPGPPGVD VADPFLLATL  120
KRSSSQALYH QTVFGAHNPI GQTEAWFSTN PLAKRPRFES AGNLPIYPQR PGEKDCAYYM  180
LTRTCKYGDS CKFDHPIWVP EGGIPDWKEV PLVDTSEPLP ERPGEPDCPF FMKTQRCKFG  240
TRCKFNHPIE KITPLVALET NSAVLPERPS EPPCAFYMKT GQCKFGATCK FHHPKDLQIS  300
TAGQENSFGE QSKLSTNETS GDFKAVKPPV TPAMMHNTKG LPIRLGEVDC PFYLKTGSCK  360
YGQTCRYNHP DRNAINPPAA AIGAAYIASP APNLSIGIVN PAASILQTFD PRLTQTTVGL  420
AAAIYPQRPG EAACDFYMKT GECKFGQRCK FHHPIDRSAP IISGKETQQE NVKLTRAGLP  480
RREGAIHCPY YMKTGTCKYG ATCRFDHPPP GEVLAMGTTA QGTWSPTGGE AEEGSSGPET  540
GGEKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-180C3H family protein