PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064368.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 548aa MW: 59216.6 Da PI: 8.0701

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.6e-11	172	196	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ XP_027064368.1 172 GEKDCAYYMLTRTCKYGDSCKFDHP 196 7889********************8 PP
2	zf-CCCH	36.9	6.1e-12	223	248	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ XP_027064368.1 223 PGEPDCPFFMKTQRCKFGTRCKFNHP 248 5789*********************8 PP
3	zf-CCCH	39.3	1.1e-12	271	295	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_027064368.1 271 EPPCAFYMKTGQCKFGATCKFHHPK 295 79*********************96 PP
4	zf-CCCH	34.1	4.6e-11	347	370	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_027064368.1 347 EVDCPFYLKTGSCKYGQTCRYNHP 370 689********************9 PP
5	zf-CCCH	38.3	2.3e-12	432	457	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG+Ck+G rCkF+H+ XP_027064368.1 432 PGEAACDFYMKTGECKFGQRCKFHHP 457 57899********************8 PP
6	zf-CCCH	36.5	8.2e-12	491	512	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_027064368.1 491 CPYYMKTGTCKYGATCRFDHPP 512 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDASSL LGSSRYLTSS 60 DPLFSSSAAR LFSHSDSYSF RIPGLDAVSP TTTSKPASSS SSWPGPPGVD VADPFLLATL 120 KRSSSQALYH QTVFGAHNPI GQTEAWFSTN PLAKRPRFES AGNLPIYPQR PGEKDCAYYM 180 LTRTCKYGDS CKFDHPIWVP EGGIPDWKEV PLVDTSEPLP ERPGEPDCPF FMKTQRCKFG 240 TRCKFNHPIE KITPLVALET NSAVLPERPS EPPCAFYMKT GQCKFGATCK FHHPKDLQIS 300 TAGQENSFGE QSKLSTNETS GDFKAVKPPV TPAMMHNTKG LPIRLGEVDC PFYLKTGSCK 360 YGQTCRYNHP DRNGISAINP PAAAIGAAYI ASPAPNLSIG IVNPAASILQ TFDPRLTQTT 420 VGLAAAIYPQ RPGEAACDFY MKTGECKFGQ RCKFHHPIDR SAPIISGKET QQENVKLTRA 480 GLPRREGAIH CPYYMKTGTC KYGATCRFDH PPPGEVLAMG TTAQGTWSPT GGEAEEGSSG 540 PETGGEKQ

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDASSL LGSSRYLTSS  60
DPLFSSSAAR LFSHSDSYSF RIPGLDAVSP TTTSKPASSS SSWPGPPGVD VADPFLLATL  120
KRSSSQALYH QTVFGAHNPI GQTEAWFSTN PLAKRPRFES AGNLPIYPQR PGEKDCAYYM  180
LTRTCKYGDS CKFDHPIWVP EGGIPDWKEV PLVDTSEPLP ERPGEPDCPF FMKTQRCKFG  240
TRCKFNHPIE KITPLVALET NSAVLPERPS EPPCAFYMKT GQCKFGATCK FHHPKDLQIS  300
TAGQENSFGE QSKLSTNETS GDFKAVKPPV TPAMMHNTKG LPIRLGEVDC PFYLKTGSCK  360
YGQTCRYNHP DRNGISAINP PAAAIGAAYI ASPAPNLSIG IVNPAASILQ TFDPRLTQTT  420
VGLAAAIYPQ RPGEAACDFY MKTGECKFGQ RCKFHHPIDR SAPIISGKET QQENVKLTRA  480
GLPRREGAIH CPYYMKTGTC KYGATCRFDH PPPGEVLAMG TTAQGTWSPT GGEAEEGSSG  540
PETGGEKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-177	C3H family protein