PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064149.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 469aa MW: 51784.4 Da PI: 7.0073

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.1	2.3e-16	321	367	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellPk+ K +Ka++L +A+eY+ksLq XP_027064149.1 321 VHNLSERRRRDRINEKMRALQELLPKS-----NKTDKASMLDEAIEYMKSLQ 367 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MDNELVELLW ENGQIVLHPQ SHHHHHPKPG TADQQENQSR QVDKHNHDQS VSRGSTGGGS 60 CQNQVTSLIQ DTETVSWIDD PFDKEFTSDF LSEFPISNPV EQGPHEDDKF KKFGISQDLH 120 NHPVQLPNDK PSDVINSLPP GFHNFDSAQP NHSHLPRAAN APLSAKADLR SSSDGVSNRT 180 LGGEAREYSS AKTVGTSHCG SNLVVNDTDT SRVSSGGIAN HRGFSGAMAK DHRVGKMSSQ 240 SDGLQTDQTE ETAITSSSSD GSETSFGRTC NQSTGTNSHK RKSRDAEDSE CQSKAAELES 300 AARKKPAVKS GSSRKSRAAE VHNLSERRRR DRINEKMRAL QELLPKSNKT DKASMLDEAI 360 EYMKSLQLQL QMMWMGSGMA PMMFPGVQHY MPRLGMGIGP LAMPSIHSQM HLPRLPLLDQ 420 ATIPNQAALC HQTTMFNPMN YHAQLQNSKL SEQYANYMAF TLCRMHHSS

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MDNELVELLW ENGQIVLHPQ SHHHHHPKPG TADQQENQSR QVDKHNHDQS VSRGSTGGGS  60
CQNQVTSLIQ DTETVSWIDD PFDKEFTSDF LSEFPISNPV EQGPHEDDKF KKFGISQDLH  120
NHPVQLPNDK PSDVINSLPP GFHNFDSAQP NHSHLPRAAN APLSAKADLR SSSDGVSNRT  180
LGGEAREYSS AKTVGTSHCG SNLVVNDTDT SRVSSGGIAN HRGFSGAMAK DHRVGKMSSQ  240
SDGLQTDQTE ETAITSSSSD GSETSFGRTC NQSTGTNSHK RKSRDAEDSE CQSKAAELES  300
AARKKPAVKS GSSRKSRAAE VHNLSERRRR DRINEKMRAL QELLPKSNKT DKASMLDEAI  360
EYMKSLQLQL QMMWMGSGMA PMMFPGVQHY MPRLGMGIGP LAMPSIHSQM HLPRLPLLDQ  420
ATIPNQAALC HQTTMFNPMN YHAQLQNSKL SEQYANYMAF TLCRMHHSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	331	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	7e-43	bHLH family protein