PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027064148.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 493aa MW: 54569.6 Da PI: 6.9219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027064148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.5e-16	346	392	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellPk+ K +Ka++L +A+eY+ksLq XP_027064148.1 346 VHNLSERRRRDRINEKMRALQELLPKS-----NKTDKASMLDEAIEYMKSLQ 392 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MNPCFPDWNF GVEFPEPILK NKPLGMDNEL VELLWENGQI VLHPQSHHHH HPKPGTADQQ 60 ENQSRQVDKH NHDQSVSRGS TGGGSCQNQV TSLIQDTETV SWIDDPFDKE FTSDFLSEFP 120 ISNPVEQGPH EDDKFKKFGI SQDLHNHPVQ LPNDKPSDVI NSLPPGFHNF DSAQPNHSHL 180 PRAANAPLSA KADLRSSSDG VSNRTLGGEA REYSSAKTVG TSHCGSNLVV NDTDTSRVSS 240 GGIANHRGFS GAMAKDHRVG KMSSQSDGLQ TDQTEETAIT SSSSDGSETS FGRTCNQSTG 300 TNSHKRKSRD AEDSECQSKA AELESAARKK PAVKSGSSRK SRAAEVHNLS ERRRRDRINE 360 KMRALQELLP KSNKTDKASM LDEAIEYMKS LQLQLQMMWM GSGMAPMMFP GVQHYMPRLG 420 MGIGPLAMPS IHSQMHLPRL PLLDQATIPN QAALCHQTTM FNPMNYHAQL QNSKLSEQYA 480 NYMAFTLCRM HHS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MNPCFPDWNF GVEFPEPILK NKPLGMDNEL VELLWENGQI VLHPQSHHHH HPKPGTADQQ  60
ENQSRQVDKH NHDQSVSRGS TGGGSCQNQV TSLIQDTETV SWIDDPFDKE FTSDFLSEFP  120
ISNPVEQGPH EDDKFKKFGI SQDLHNHPVQ LPNDKPSDVI NSLPPGFHNF DSAQPNHSHL  180
PRAANAPLSA KADLRSSSDG VSNRTLGGEA REYSSAKTVG TSHCGSNLVV NDTDTSRVSS  240
GGIANHRGFS GAMAKDHRVG KMSSQSDGLQ TDQTEETAIT SSSSDGSETS FGRTCNQSTG  300
TNSHKRKSRD AEDSECQSKA AELESAARKK PAVKSGSSRK SRAAEVHNLS ERRRRDRINE  360
KMRALQELLP KSNKTDKASM LDEAIEYMKS LQLQLQMMWM GSGMAPMMFP GVQHYMPRLG  420
MGIGPLAMPS IHSQMHLPRL PLLDQATIPN QAALCHQTTM FNPMNYHAQL QNSKLSEQYA  480
NYMAFTLCRM HHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	356	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-43	bHLH family protein