PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027063955.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 408aa MW: 46931.7 Da PI: 7.6682 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.1 | 3.8e-121 | 33 | 408 | 1 | 374 |
GRAS 1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsP 89 +++lL++cAe +ss +d + a++l++ l +++p+gd+ +Rl++ ft+AL+ rl+r +++l ++lp ++++ +s+e a l++ +++v P XP_027063955.1 33 MRQLLISCAELMSSsSDSSSAHRLITILMANSNPYGDSXERLIHQFTRALSLRLNRyATTTLLNTLPNTQQHLVVESDEQALLQTaylsLNQVXP 127 589*******998847888*************************************888889999988888876666665555556778****** PP GRAS 90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +++fs+ltaNqaIl+a+++ e++Hi+Df+i++GlQWp+++qa+ +R + pslRiTg g+ + e+l++tg+rLakfA++lg++f+f++l+ XP_027063955.1 128 FIRFSQLTANQAILDAIDQGqEAIHILDFNIMHGLQWPPFMQAIVER-YPRPSLRITGTGN----DLETLRRTGDRLAKFAHSLGLRFQFHPLHL 217 *****************876599***********************9.899**********....***************************844 PP GRAS 184 krledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 + ed + L + pgE+laVn+v+ lhrll+++ l+ +L+ +k ++P+vv+++e+ea+hn++ Fl+rf+eal++y+a+fdslea+ XP_027063955.1 218 H-NEDDPIAVLssavVLLPGESLAVNCVHYLHRLLKDRDGLRL----FLHRIKVMNPRVVTMAEREANHNHPLFLQRFVEALDHYAAVFDSLEAT 307 4.33333444411115666****************77777776....************************************************ PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368 lp++s+er +vE++++greiv++va+ g++rrerhe++++W+ + +++GF++vpls +a +qaklllr ++ s+gy+++ ++s++lgW+++ L+ XP_027063955.1 308 LPPNSRERLNVEQVWFGREIVDIVAADGDHRRERHERFRSWELMXRSCGFNNVPLSPFALSQAKLLLRLHYpSEGYQLHILNDSFFLGWQNQLLY 402 *********************************************************************************************** PP GRAS 369 svSaWr 374 svS+Wr XP_027063955.1 403 SVSSWR 408 *****8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence |
MLGSFGSSSQ HHHVQYHQIQ QYRSFTSPTL AHMRQLLISC AELMSSSSDS SSAHRLITIL 60 MANSNPYGDS XERLIHQFTR ALSLRLNRYA TTTLLNTLPN TQQHLVVESD EQALLQTAYL 120 SLNQVXPFIR FSQLTANQAI LDAIDQGQEA IHILDFNIMH GLQWPPFMQA IVERYPRPSL 180 RITGTGNDLE TLRRTGDRLA KFAHSLGLRF QFHPLHLHNE DDPIAVLSSA VVLLPGESLA 240 VNCVHYLHRL LKDRDGLRLF LHRIKVMNPR VVTMAEREAN HNHPLFLQRF VEALDHYAAV 300 FDSLEATLPP NSRERLNVEQ VWFGREIVDI VAADGDHRRE RHERFRSWEL MXRSCGFNNV 360 PLSPFALSQA KLLLRLHYPS EGYQLHILND SFFLGWQNQL LYSVSSWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-128 | GRAS family protein |