PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063943.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 408aa    MW: 46924.4 Da    PI: 7.6682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.15.7e-123334081374
            GRAS   1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsP 89 
                     +++lL++cAe +ss +d + a++l++ l  +++p+gd+++Rl++ ft+AL+ rl+r  +++l ++lp ++++   +s+e a l++    +++v+P
  XP_027063943.1  33 MRQLLISCAELMSSsSDSSSAHRLITILMANSNPYGDSTERLIHQFTRALSLRLNRyATTTLLNTLPNTQQHLVVESDEQALLQTaylsLNQVTP 127
                     589*******998847888*************************************888889999988888876666665555556778****** PP

            GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     +++fs+ltaNqaIl+a+++  e++Hi+Df+i++GlQWp+++qa+ +R  + pslRiTg g+    + e+l++tg+rLakfA++lg++f+f++l+ 
  XP_027063943.1 128 FIRFSQLTANQAILDAIDQGqEAIHILDFNIMHGLQWPPFMQAIVER-YPRPSLRITGTGN----DLETLRRTGDRLAKFAHSLGLRFQFHPLHL 217
                     *****************876599***********************9.899**********....***************************844 PP

            GRAS 184 krledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                     +  ed  +  L     + pgE+laVn+v+ lhrll+++  l+     +L+ +k ++P+vv+++e+ea+hn++ Fl+rf+eal++y+a+fdslea+
  XP_027063943.1 218 H-NEDDPIAVLssavVLLPGESLAVNCVHYLHRLLKDRDGLRL----FLHRIKVMNPRVVTMAEREANHNHPLFLQRFVEALDHYAAVFDSLEAT 307
                     4.33333444411115666****************77777776....************************************************ PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     lp++s+er +vE++++greiv++va+ g++rrerhe++++W+ +++++GF++vpls +a +qaklllr ++ s+gy+++  ++s++lgW+++ L+
  XP_027063943.1 308 LPPNSRERLNVEQVWFGREIVDIVAADGDHRRERHERFRSWELMFRSCGFNNVPLSPFALSQAKLLLRLHYpSEGYQLHILNDSFFLGWQNQLLY 402
                     *********************************************************************************************** PP

            GRAS 369 svSaWr 374
                     svS+Wr
  XP_027063943.1 403 SVSSWR 408
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MLGSFGSSSQ HHHVQYHQIQ QYRSFTSPTL AHMRQLLISC AELMSSSSDS SSAHRLITIL  60
MANSNPYGDS TERLIHQFTR ALSLRLNRYA TTTLLNTLPN TQQHLVVESD EQALLQTAYL  120
SLNQVTPFIR FSQLTANQAI LDAIDQGQEA IHILDFNIMH GLQWPPFMQA IVERYPRPSL  180
RITGTGNDLE TLRRTGDRLA KFAHSLGLRF QFHPLHLHNE DDPIAVLSSA VVLLPGESLA  240
VNCVHYLHRL LKDRDGLRLF LHRIKVMNPR VVTMAEREAN HNHPLFLQRF VEALDHYAAV  300
FDSLEATLPP NSRERLNVEQ VWFGREIVDI VAADGDHRRE RHERFRSWEL MFRSCGFNNV  360
PLSPFALSQA KLLLRLHYPS EGYQLHILND SFFLGWQNQL LYSVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-129GRAS family protein