PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063839.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 382aa    MW: 43333.3 Da    PI: 4.7678
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.92.2e-80237525373
            GRAS  25 arlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkfshltaNqaIleavegeervHiiD 116
                     + l++ asp gdp+qRl++ f++AL +r++r +++ ++   ++s+++     + +++++l  ++++ P+++f++ + N+aI +a++g ++vHi+D
  XP_027063839.1   2 WVLNNVASPVGDPNQRLTSWFLKALISRVSRVCPTPMNLNgNSSPQR-----RLMTVTELagYVDLIPWHRFGFCASNSAIFKAIQGYNKVHILD 91 
                     7899***************************8877776552333333.....22223333449******************************** PP

            GRAS 117 fdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl................vakrledl... 189
                     ++i++++QWp+L+++La+Rpegpps+Ri + +   ++    + + ee+g+rL +fA+  +vpfefnv+                           
  XP_027063839.1  92 LSITHCMQWPTLIDTLAKRPEGPPSVRISVPSWRPPVpplLNVSSEEVGQRLGNFAKFKDVPFEFNVIgeqptvpsspcistleC------Sslq 180
                     *****************************988866668899999****************************9998885544430......2223 PP

            GRAS 190 .........eleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                              ++++L+++ +Eal++n++  l +l+de+ + +s    +rd +L+ +k+l+P +++vv+++++++ +++  r++ +++y +  fd+l
  XP_027063839.1 181 ydfllnqvlNPSTLKLEDDEALVINCQNWLRYLPDEQNNGASqeisCRDIFLNRIKDLNPCIITVVDEDSELDVSNLTSRITTCFNYLWIPFDAL 275
                     334455555888889999****************9988766656779************************************************ PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                     e+ l++++++ri +E+  +g +i+n++a eg++r+er e+  k ++r+++ GF +vp+ e++ +++k ll +++  g+ +++e++ lvl+Wk+++
  XP_027063839.1 276 ETFLSKDNSQRIEYEAD-IGHKIENIIAFEGTQRIERLESGTKFSQRMRNNGFFSVPFCEETISEVKFLLDEHA-SGWGMKKEDDMLVLTWKGHN 368
                     *****************.********************************************************.8999**************** PP

            GRAS 367 LvsvSaW 373
                      v ++aW
  XP_027063839.1 369 SVYATAW 375
                     ******* PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MWVLNNVASP VGDPNQRLTS WFLKALISRV SRVCPTPMNL NGNSSPQRRL MTVTELAGYV  60
DLIPWHRFGF CASNSAIFKA IQGYNKVHIL DLSITHCMQW PTLIDTLAKR PEGPPSVRIS  120
VPSWRPPVPP LLNVSSEEVG QRLGNFAKFK DVPFEFNVIG EQPTVPSSPC ISTLECSSLQ  180
YDFLLNQVLN PSTLKLEDDE ALVINCQNWL RYLPDEQNNG ASQEISCRDI FLNRIKDLNP  240
CIITVVDEDS ELDVSNLTSR ITTCFNYLWI PFDALETFLS KDNSQRIEYE ADIGHKIENI  300
IAFEGTQRIE RLESGTKFSQ RMRNNGFFSV PFCEETISEV KFLLDEHASG WGMKKEDDML  360
VLTWKGHNSV YATAWVPCGF DD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-111GRAS family protein