PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063506.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 75aa    MW: 8503.35 Da    PI: 4.449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-122869346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      ++++E+ l+++ +++ G++ W++Ia +++ gRt+k++ ++w++
   XP_027063506.1 28 HFSEDEEILIIRMFNLVGKR-WSLIAGRIP-GRTAKEIEEYWNT 69
                     69******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    
MADSDQSTTL NEKSAGSQED KSQDSELHFS EDEEILIIRM FNLVGKRWSL IAGRIPGRTA  60
KEIEEYWNTR SATSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.13e-16MYB_related family protein