PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063497.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 267aa MW: 30118 Da PI: 8.7852

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.3e-33	62	202	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+P+d+e++ e+L++kv+++ ++++ + ++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + XP_027063497.1 62 LPAGVKFDPSDQEIL-EHLEAKVRSDVhklhplIDEFIHtLEGEnGICCTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdidgcET 154 799*********9.99**9995554332222222443336******.555666688**************75545766678 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v + kg+++g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_027063497.1 155 RWHKTGKTRPVAV-KGKVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 202 8********.999*******66589************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MTCCSDCSNE RTASRRLPTS PDHHDNANNH ESPKSKQMMA CPSCGLTLQS PEKAGIHDLP 60 GLPAGVKFDP SDQEILEHLE AKVRSDVHKL HPLIDEFIHT LEGENGICCT HPEKLPGVSK 120 DGLVRHFFHR PSKAYTTGTR KRRKVHTDID GCETRWHKTG KTRPVAVKGK VKGFKKILVL 180 YTNYGRQRKP EKTNWVMHQY HLGNNEDEKE GELVVSKVFY QTQPRQCGSL IKDSPVKGNG 240 RIGHEGSHLN NSTFVEYYNS ALISFDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	170	RKRRKVHTDIDGCETRWHKTGKTRPVAVKGK
2	141	171	RKRRKVHTDIDGCETRWHKTGKTRPVAVKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-113	NAC family protein