PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063490.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 442aa MW: 47632.4 Da PI: 8.4122

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_027063490.1 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 79****************************************************8 PP
2	Myb_DNA-binding	72.1	8.4e-23	36	87	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ XP_027063490.1 36 RLRWTVELHERFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 87 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MFHTKKPASA MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VTQLGGPDKA 60 TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFSDHP IKDASTLELQ RSSSASSSGM 120 IGRSMNDNVR ITDAIRMQME VQRRLHEQLE VQRHLQLRIE AQGKYMQTIL EKACQTLAGE 180 NMASAAAAGS YNKGGNQAGG GVVDIKEFGP PLSFPSLQDL NIYGSGEQLE LQQGGMVVDR 240 SPSLDGFMSN NNDTQLCHLG KKRPTPPSPY GGGSGKSPAA AASLMWSDHH HHHHDLRLQE 300 LGSAAASCLG NSQDHHHHHD AFKGDHHHQI QMNNAPSGAG VLSLERSNVD VVIDSLSDST 360 CSNMYETKPL ISGSCGADGG MVLGGTDQKN ASSKLERPSP RRASTTATTP PPSSSSDHRM 420 NAVQIGTAAA GAMSQARNSP FG

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MFHTKKPASA MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VTQLGGPDKA  60
TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFSDHP IKDASTLELQ RSSSASSSGM  120
IGRSMNDNVR ITDAIRMQME VQRRLHEQLE VQRHLQLRIE AQGKYMQTIL EKACQTLAGE  180
NMASAAAAGS YNKGGNQAGG GVVDIKEFGP PLSFPSLQDL NIYGSGEQLE LQQGGMVVDR  240
SPSLDGFMSN NNDTQLCHLG KKRPTPPSPY GGGSGKSPAA AASLMWSDHH HHHHDLRLQE  300
LGSAAASCLG NSQDHHHHHD AFKGDHHHQI QMNNAPSGAG VLSLERSNVD VVIDSLSDST  360
CSNMYETKPL ISGSCGADGG MVLGGTDQKN ASSKLERPSP RRASTTATTP PPSSSSDHRM  420
NAVQIGTAAA GAMSQARNSP FG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-90	G2-like family protein