PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063489.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 445aa MW: 47974.8 Da PI: 8.4122

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.5e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_027063489.1 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 79****************************************************8 PP
2	Myb_DNA-binding	72.1	8.5e-23	36	87	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ XP_027063489.1 36 RLRWTVELHERFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 87 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MFHTKKPASA MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VTQLGGPDKA 60 TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFSDHP IKDGERASTL ELQRSSSASS 120 SGMIGRSMND NVRITDAIRM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ TILEKACQTL 180 AGENMASAAA AGSYNKGGNQ AGGGVVDIKE FGPPLSFPSL QDLNIYGSGE QLELQQGGMV 240 VDRSPSLDGF MSNNNDTQLC HLGKKRPTPP SPYGGGSGKS PAAAASLMWS DHHHHHHDLR 300 LQELGSAAAS CLGNSQDHHH HHDAFKGDHH HQIQMNNAPS GAGVLSLERS NVDVVIDSLS 360 DSTCSNMYET KPLISGSCGA DGGMVLGGTD QKNASSKLER PSPRRASTTA TTPPPSSSSD 420 HRMNAVQIGT AAAGAMSQAR NSPFG

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MFHTKKPASA MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VTQLGGPDKA  60
TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEFSDHP IKDGERASTL ELQRSSSASS  120
SGMIGRSMND NVRITDAIRM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ TILEKACQTL  180
AGENMASAAA AGSYNKGGNQ AGGGVVDIKE FGPPLSFPSL QDLNIYGSGE QLELQQGGMV  240
VDRSPSLDGF MSNNNDTQLC HLGKKRPTPP SPYGGGSGKS PAAAASLMWS DHHHHHHDLR  300
LQELGSAAAS CLGNSQDHHH HHDAFKGDHH HQIQMNNAPS GAGVLSLERS NVDVVIDSLS  360
DSTCSNMYET KPLISGSCGA DGGMVLGGTD QKNASSKLER PSPRRASTTA TTPPPSSSSD  420
HRMNAVQIGT AAAGAMSQAR NSPFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	3e-94	G2-like family protein