PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063410.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 345aa MW: 38352.3 Da PI: 7.3456

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.1	4.5e-36	25	124	1	90
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa...sece 74 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + + s XP_027063410.1 25 ATGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELphnhpneislmaapstdsN---PgsaS--- 113 589**************************************************************5555555554444432221...01112... PP TCP 75 aesssssasnsssg........ka 90 g ++ XP_027063410.1 114 -------------GcqgfeqrsES 124 .............12222221111 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MKRAGGGGDG QGEIIQVQGG HILRATGRKD RHSKVYTSKG PRDRRVRLSA HTAIQFYDVQ 60 DRLGYDRPSK AVDWLIKKAK NAIDKLAELP HNHPNEISLM AAPSTDSNPG SASGCQGFEQ 120 RSESSSLYAI QRHQLHDNPN GNSGVIPPEV DTQSIADTMK TFFPVSPGNS LMNMQSYQHD 180 RMSRQPSIQT EDLGLSLHSL QDQNLNHRSY TEQMLFSGSN STMFPGTNYQ QKTESWSGAG 240 EGENRNIGFI FNPHSMPVPQ QLIFSQNSAF SQREPLQSNY SHLFHAWNER QMPSVDHHNA 300 QAISQSSMYN IHFGSDFQVP ARIRGDEEPG VVSLQPSSVS PSSQH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MKRAGGGGDG QGEIIQVQGG HILRATGRKD RHSKVYTSKG PRDRRVRLSA HTAIQFYDVQ  60
DRLGYDRPSK AVDWLIKKAK NAIDKLAELP HNHPNEISLM AAPSTDSNPG SASGCQGFEQ  120
RSESSSLYAI QRHQLHDNPN GNSGVIPPEV DTQSIADTMK TFFPVSPGNS LMNMQSYQHD  180
RMSRQPSIQT EDLGLSLHSL QDQNLNHRSY TEQMLFSGSN STMFPGTNYQ QKTESWSGAG  240
EGENRNIGFI FNPHSMPVPQ QLIFSQNSAF SQREPLQSNY SHLFHAWNER QMPSVDHHNA  300
QAISQSSMYN IHFGSDFQVP ARIRGDEEPG VVSLQPSSVS PSSQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	5e-55	TCP family protein