PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063222.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 157aa MW: 17531.8 Da PI: 9.5602

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+ L H +H XP_027063222.1 41 FTCKTCNKQFSSFQALGGHRASH 63 89**********99999998887 PP
2	zf-C2H2	12.3	0.00053	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H XP_027063222.1 87 HECSICGLEFPLGQALGGHMRRH 109 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence
MTVKRSREDR EVEAFAMANC LMLLSNMAKT TSSPPSLDRV FTCKTCNKQF SSFQALGGHR 60 ASHKRTRLVA ADGLHDQNHS PAKPKTHECS ICGLEFPLGQ ALGGHMRRHR NDGTAEETQS 120 GSQKSNSRSD SHRALLLDLN LTPRENEFKF GRLDTFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-37	C2H2 family protein