PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027063157.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 364aa MW: 40813.4 Da PI: 7.5332

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027063157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1.1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl XP_027063157.1 14 KGPWSPEEDAKLKEFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.7	9.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_027063157.1 69 GEFSDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM 120 IPLDPRKLPP FSNSLHTTSS PQSQAFSSLS QLYNDCSPYY STSAKSCLTG FESFPSVQPN 180 LLFNGNNNNV NPMATITAAN HHSYLQGHNQ EGLISPMQFY PGKDNMLIFG GTDQASCSSS 240 DGSCSQISYG KEIKQEHMNG GSLHQGYNLS NSTNGYDHHH HQENQKFMVD YGNQISSTTW 300 GDGRGNDHDQ KPSVVLCGNS TSTTQLQYDL EEVKQLISSS NMSLFFNDEN KTHESREAMY 360 YYNY

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
IPLDPRKLPP FSNSLHTTSS PQSQAFSSLS QLYNDCSPYY STSAKSCLTG FESFPSVQPN  180
LLFNGNNNNV NPMATITAAN HHSYLQGHNQ EGLISPMQFY PGKDNMLIFG GTDQASCSSS  240
DGSCSQISYG KEIKQEHMNG GSLHQGYNLS NSTNGYDHHH HQENQKFMVD YGNQISSTTW  300
GDGRGNDHDQ KPSVVLCGNS TSTTQLQYDL EEVKQLISSS NMSLFFNDEN KTHESREAMY  360
YYNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-78	MYB family protein