PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062698.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 424aa MW: 48222.6 Da PI: 5.2654

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	27.6	3.4e-09	119	176	5	62
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk 62 + ++Ae v+++++ a++lL+ las++++++qR++ yf++AL++r+ +++ +++ XP_027062698.1 119 VQAAAEKVEDEKFVYARKLLNMCDVLASKTDNSVQRVVYYFAKALNERIDQEWGIISS 176 4467899******************************************998876654 PP
2	GRAS	85.4	9.3e-27	231	420	182	374
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 va++l+dl+ e ++++ +Ea+a+ l+ ql +ll+ + +le ++ ++++ +P +v+ e e+ +n+++Fle f e+l + s l ds+++ + XP_027062698.1 231 VASDLKDLKEEFFDLEANEAVAIDLACQLWSLLAWPNHLEA----LMAVIQNPKPCFLVLKEVEVCTNAPNFLELFKETLLFISGLIDSMNSCME 321 68899**************************66666666....********************************************99 PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370 ++ r+ vE++ i +v+++eg+er+ rhe+ + Wr ++++GF + ls++ qa+l l++ + + + + +sl++ W++ + s+ XP_027062698.1 322 KHILYRKPVEEVHWWGMIHDVLTAEGTERTLRHERIGFWRFLFKKFGFVESDLSQTSILQANLTLKRSDqLRPGTSVMDGKSLIFRWNETSFQSI 416 999************************************************************99866566678999********** PP GRAS 371 SaWr 374 SaW+ XP_027062698.1 417 SAWE 420 *5 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MDSCLVITSY LLQISCNSEE EVESPFPSLT SVELLKPRGT KLKRLRDSQN LLEVSPDIPN 60 NSCSFQSSPT DKIMKFEKAR LVQLKSKKAD VLSSVKGCFR GQCGVSSKVA QDLELALLVQ 120 AAAEKVEDEK FVYARKLLNM CDVLASKTDN SVQRVVYYFA KALNERIDQE WGIISSDKLK 180 RSRMVANDFE IDNGSQWTLI MEAFAVRHEC PLELLKITAA GTCEETMKKT VASDLKDLKE 240 EFFDLEANEA VAIDLACQLW SLLAWPNHLE ALMAVIQNPK PCFLVLKEVE VCTNAPNFLE 300 LFKETLLFIS GLIDSMNSCM EKHILYRKPV EEVHWWGMIH DVLTAEGTER TLRHERIGFW 360 RFLFKKFGFV ESDLSQTSIL QANLTLKRSD QLRPGTSVMD GKSLIFRWNE TSFQSISAWE 420 FPSD

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MDSCLVITSY LLQISCNSEE EVESPFPSLT SVELLKPRGT KLKRLRDSQN LLEVSPDIPN  60
NSCSFQSSPT DKIMKFEKAR LVQLKSKKAD VLSSVKGCFR GQCGVSSKVA QDLELALLVQ  120
AAAEKVEDEK FVYARKLLNM CDVLASKTDN SVQRVVYYFA KALNERIDQE WGIISSDKLK  180
RSRMVANDFE IDNGSQWTLI MEAFAVRHEC PLELLKITAA GTCEETMKKT VASDLKDLKE  240
EFFDLEANEA VAIDLACQLW SLLAWPNHLE ALMAVIQNPK PCFLVLKEVE VCTNAPNFLE  300
LFKETLLFIS GLIDSMNSCM EKHILYRKPV EEVHWWGMIH DVLTAEGTER TLRHERIGFW  360
RFLFKKFGFV ESDLSQTSIL QANLTLKRSD QLRPGTSVMD GKSLIFRWNE TSFQSISAWE  420
FPSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	7e-22	GRAS family protein