PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062574.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 234aa    MW: 25774.2 Da    PI: 8.1905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.8e-1178125454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE++RRdr+N++f eL  ll +    + +K +Ka+iL  Av+ + +L
  XP_027062574.1  78 SKACREKQRRDRLNDKFVELGALLDPG---RPPKTDKAAILVDAVRIVTQL 125
                     5678**********************8...89*************999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MVSPENTNWL YDYAFEDIAV PDGNFPASAS GFNWPVQTLN GSSNVSVEID GSLGDSDGPK  60
ETGSRKRLRT ESCASTSSKA CREKQRRDRL NDKFVELGAL LDPGRPPKTD KAAILVDAVR  120
IVTQLRTEAQ KLKDSNLSLQ EKIKELKAEK NELRDEKQRL KGEKEKLEQQ LKTVNTQASF  180
MPPPTMPAPF AAQGQAPGNK LVPIISYPGV AMWQFMPPAA VDTSQDHVLR PPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-91bHLH family protein