PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027062402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 402aa MW: 44184.4 Da PI: 6.9491 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.2 | 4.8e-12 | 55 | 80 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG+rC+F+H+ XP_027062402.1 55 PGEPDCIYYLRTGKCGYGSRCRFNHP 80 5789*********************8 PP | |||||||
2 | zf-CCCH | 35.5 | 1.7e-11 | 98 | 123 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++Cr++ rtG+CkyG+ C+++H++ XP_027062402.1 98 GKPECRHYIRTGICKYGSACRYHHPQ 123 5799********************97 PP | |||||||
3 | zf-CCCH | 29.6 | 1.2e-09 | 249 | 273 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f tG CkyG+ Ck+ H+ XP_027062402.1 249 DQPECHDFVNTGSCKYGADCKYYHP 273 689*********************8 PP | |||||||
4 | zf-CCCH | 31.6 | 2.8e-10 | 295 | 319 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++a G C+yG++Ck+ H+ XP_027062402.1 295 GQAVCSYYAMHGLCRYGPTCKYDHP 319 7899********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence |
MMKNIEVQHN GGVSKSSNLF AGKERVDEAM GVLKIEDNGD DTGGAYGAVC FPDRPGEPDC 60 IYYLRTGKCG YGSRCRFNHP SYSSQGHQNS GVLPEREGKP ECRHYIRTGI CKYGSACRYH 120 HPQDRHNSDP LLLNIWGFPM RKDEKPCPYY MRTRSTAYGS TTLAFMTSSS IPYVGGVSDL 180 SIPKTNSIIN PSVQGSQSYM PLYLSPFQCW STYMGTMDGS SILDDLADQT FDGQTPLLSS 240 SSHQPDRPDQ PECHDFVNTG SCKYGADCKY YHPGNKVAPT TSNLLGPLGL PLRPGQAVCS 300 YYAMHGLCRY GPTCKYDHPL AGYVGVPSLV FNTSVLPYQW NSPTVPSTET SPSLSSKLPD 360 LSRSSEVTMQ KGQNSNTEKL LHIGALPSTS QRPLEVQQDE SD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G04990.2 | 2e-67 | C3H family protein |