PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062402.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 402aa    MW: 44184.4 Da    PI: 6.9491
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.24.8e-125580126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG+rC+F+H+
  XP_027062402.1 55 PGEPDCIYYLRTGKCGYGSRCRFNHP 80
                    5789*********************8 PP

2zf-CCCH35.51.7e-1198123227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + ++Cr++ rtG+CkyG+ C+++H++
  XP_027062402.1  98 GKPECRHYIRTGICKYGSACRYHHPQ 123
                     5799********************97 PP

3zf-CCCH29.61.2e-09249273226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f  tG CkyG+ Ck+ H+
  XP_027062402.1 249 DQPECHDFVNTGSCKYGADCKYYHP 273
                     689*********************8 PP

4zf-CCCH31.62.8e-10295319226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+++a  G C+yG++Ck+ H+
  XP_027062402.1 295 GQAVCSYYAMHGLCRYGPTCKYDHP 319
                     7899********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MMKNIEVQHN GGVSKSSNLF AGKERVDEAM GVLKIEDNGD DTGGAYGAVC FPDRPGEPDC  60
IYYLRTGKCG YGSRCRFNHP SYSSQGHQNS GVLPEREGKP ECRHYIRTGI CKYGSACRYH  120
HPQDRHNSDP LLLNIWGFPM RKDEKPCPYY MRTRSTAYGS TTLAFMTSSS IPYVGGVSDL  180
SIPKTNSIIN PSVQGSQSYM PLYLSPFQCW STYMGTMDGS SILDDLADQT FDGQTPLLSS  240
SSHQPDRPDQ PECHDFVNTG SCKYGADCKY YHPGNKVAPT TSNLLGPLGL PLRPGQAVCS  300
YYAMHGLCRY GPTCKYDHPL AGYVGVPSLV FNTSVLPYQW NSPTVPSTET SPSLSSKLPD  360
LSRSSEVTMQ KGQNSNTEKL LHIGALPSTS QRPLEVQQDE SD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-67C3H family protein