PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062401.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 428aa    MW: 46842.5 Da    PI: 7.0096
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-125580126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG+rC+F+H+
  XP_027062401.1 55 PGEPDCIYYLRTGKCGYGSRCRFNHP 80
                    5789*********************8 PP

2zf-CCCH35.41.8e-1198123227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + ++Cr++ rtG+CkyG+ C+++H++
  XP_027062401.1  98 GKPECRHYIRTGICKYGSACRYHHPQ 123
                     5799********************97 PP

3zf-CCCH33.38.4e-11143168227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++rt tCk+G  CkF H++
  XP_027062401.1 143 DEKPCPYYMRTSTCKFGVMCKFDHPQ 168
                     5789********************97 PP

4zf-CCCH29.51.3e-09275299226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f  tG CkyG+ Ck+ H+
  XP_027062401.1 275 DQPECHDFVNTGSCKYGADCKYYHP 299
                     689*********************8 PP

5zf-CCCH31.53e-10321345226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+++a  G C+yG++Ck+ H+
  XP_027062401.1 321 GQAVCSYYAMHGLCRYGPTCKYDHP 345
                     7899********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MMKNIEVQHN GGVSKSSNLF AGKERVDEAM GVLKIEDNGD DTGGAYGAVC FPDRPGEPDC  60
IYYLRTGKCG YGSRCRFNHP SYSSQGHQNS GVLPEREGKP ECRHYIRTGI CKYGSACRYH  120
HPQDRHNSDP LLLNIWGFPM RKDEKPCPYY MRTSTCKFGV MCKFDHPQPV SAANGLHVTG  180
STAYGSTTLA FMTSSSIPYV GGVSDLSIPK TNSIINPSVQ GSQSYMPLYL SPFQCWSTYM  240
GTMDGSSILD DLADQTFDGQ TPLLSSSSHQ PDRPDQPECH DFVNTGSCKY GADCKYYHPG  300
NKVAPTTSNL LGPLGLPLRP GQAVCSYYAM HGLCRYGPTC KYDHPLAGYV GVPSLVFNTS  360
VLPYQWNSPT VPSTETSPSL SSKLPDLSRS SEVTMQKGQN SNTEKLLHIG ALPSTSQRPL  420
EVQQDESD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-79C3H family protein