PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027062401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 46842.5 Da PI: 7.0096 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.2e-12 | 55 | 80 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG+rC+F+H+ XP_027062401.1 55 PGEPDCIYYLRTGKCGYGSRCRFNHP 80 5789*********************8 PP | |||||||
2 | zf-CCCH | 35.4 | 1.8e-11 | 98 | 123 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++Cr++ rtG+CkyG+ C+++H++ XP_027062401.1 98 GKPECRHYIRTGICKYGSACRYHHPQ 123 5799********************97 PP | |||||||
3 | zf-CCCH | 33.3 | 8.4e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rt tCk+G CkF H++ XP_027062401.1 143 DEKPCPYYMRTSTCKFGVMCKFDHPQ 168 5789********************97 PP | |||||||
4 | zf-CCCH | 29.5 | 1.3e-09 | 275 | 299 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f tG CkyG+ Ck+ H+ XP_027062401.1 275 DQPECHDFVNTGSCKYGADCKYYHP 299 689*********************8 PP | |||||||
5 | zf-CCCH | 31.5 | 3e-10 | 321 | 345 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++a G C+yG++Ck+ H+ XP_027062401.1 321 GQAVCSYYAMHGLCRYGPTCKYDHP 345 7899********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence |
MMKNIEVQHN GGVSKSSNLF AGKERVDEAM GVLKIEDNGD DTGGAYGAVC FPDRPGEPDC 60 IYYLRTGKCG YGSRCRFNHP SYSSQGHQNS GVLPEREGKP ECRHYIRTGI CKYGSACRYH 120 HPQDRHNSDP LLLNIWGFPM RKDEKPCPYY MRTSTCKFGV MCKFDHPQPV SAANGLHVTG 180 STAYGSTTLA FMTSSSIPYV GGVSDLSIPK TNSIINPSVQ GSQSYMPLYL SPFQCWSTYM 240 GTMDGSSILD DLADQTFDGQ TPLLSSSSHQ PDRPDQPECH DFVNTGSCKY GADCKYYHPG 300 NKVAPTTSNL LGPLGLPLRP GQAVCSYYAM HGLCRYGPTC KYDHPLAGYV GVPSLVFNTS 360 VLPYQWNSPT VPSTETSPSL SSKLPDLSRS SEVTMQKGQN SNTEKLLHIG ALPSTSQRPL 420 EVQQDESD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G04990.2 | 2e-79 | C3H family protein |