PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062279.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 843aa    MW: 91400.1 Da    PI: 6.2303
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.48.2e-1264868412374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav++++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ + s    ++ ++a+++f+ +sP++kfsh+
  XP_027062279.1 486 LTLLLQCAEAVAADNLEEANNMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPAVPHS----QKMVSAFQVFNGISPFIKFSHF 576
                     579*************************************************************99996....89999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfefn+ va+++ +l++
  XP_027062279.1 577 TANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRMTGLGT----SMEALEATGKRLSDFAEKLGLPFEFNA-VADKVGNLDP 666
                     *****************************************************....***************************.8********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      +L+v+++Ea+aV++    h l+d s+s +s    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE
  XP_027062279.1 667 GRLKVSKREAVAVHWLQ--HCLYDVSGSDNS----TLRLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVE 754
                     ****************9..889988999888....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r     ++++Wr++l ++GFk ++l+ +aa+qa lll +++sdgy++ e++g+l lgW+d  L+++SaWr
  XP_027062279.1 755 QQLLSREIRNVLAFGGPSRSS-GDKFNNWRQKLLQSGFKGISLGGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWRDLCLLTASAWR 841
                     *****************9655.566**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MAKAFSLVND SGRRGNSSLN NCSDDSPLPI SSNKDFNVPL HSSLNLHSGK MARKRAASDI  60
EIQPVQRFLR RTASPTTTAD IIPLDEFGVC SINIVDTNTG VINNPNQHQH PDDVPTYSTT  120
IVLPSCTDLS VTTSSAGGTG SESAFSTSSS SNMMGSLSPA PLPHNLIHHR QRPQTPTQTP  180
SICVFSGLPL FPPDRNKYAA AGGAEQLLPS STSTSSNTAA GIDGAMLFTM EDNTTAAAWI  240
DSIIKDLIHN SANVSIPQLI QNVREIIHPC NPNLAALIEY RLRSLTSSAG AADTPNPDNY  300
HPERRRRESI SVPPNVQRQE DYFHLQGQGH GQLLAGSSGL KLYLDEDNLF SHTNTHSPLI  360
QDQYLNWGFA LPRTASTAVG GNSQQQQPMR NNDPTAAAAT GVSYVSSATV TNLANQVHHR  420
SQQQQQSSEP EETQTPQPSE QQHRDSPPPP DADAAAAVTA ASSASRSLRN EEIRQQKRDE  480
QGLHLLTLLL QCAEAVAADN LEEANNMLLE ISELSTPFGT SAQRVAAYFS EAMSARLVSS  540
CLGIYASLPA VPHSQKMVSA FQVFNGISPF IKFSHFTANQ AIQEAFDREE RVHIIDLDIM  600
QGLQWPGLFH ILASRPGGPP FVRMTGLGTS MEALEATGKR LSDFAEKLGL PFEFNAVADK  660
VGNLDPGRLK VSKREAVAVH WLQHCLYDVS GSDNSTLRLL QRLAPKVVTV VEQDLSHAGS  720
FLGRFVEAIH YYSALFDSLG ACYGEESEER HVVEQQLLSR EIRNVLAFGG PSRSSGDKFN  780
NWRQKLLQSG FKGISLGGNA AAQATLLLGM FPSDGYTLVE DNGTLKLGWR DLCLLTASAW  840
RPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303308ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein