PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027062259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 479aa MW: 51554.2 Da PI: 6.3042 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.4 | 8.5e-109 | 123 | 476 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lLl+cAe+v+ + l a++lL ++ el+sp g++ +R+aayf+ AL+ar+++s ++y+ l+ ++ ++++ ++ ++al++++ +sP++kfsh+t XP_027062259.1 123 GLLLQCAECVAMDRLDDASNLLPEIAELSSPFGSSAERVAAYFADALSARIVSSYLGTYAPLTIKSLTKSHNQKLFNALQTYNSISPLIKFSHFT 217 58********************************************************************************************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.el 191 aNqaI +a++ge++vH+iD+di+qGlQWp L++ LasRp++ sl+iTg+gs s e le+tg+rL++fA +lg+pfefn++ + ++ ++ +l XP_027062259.1 218 ANQAIFQALHGEDHVHVIDLDIMQGLQWPGLFHILASRPRKIKSLKITGLGS----SMELLESTGRRLSEFAGSLGLPFEFNPV-EGKIGNVkDL 307 ****************************************************....***************************6.5555555489 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +Lrv gE++++++++ h l+ +++ + + +l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l +l+++s er++vE XP_027062259.1 308 GQLRVMAGETIVIHWMH--HCLY----DITG------SDFGTLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGTDSVERHTVE 389 ***************98..5565....3333......5688****************.789********************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++llg ei+n+va g +r+ + + +e+ e l++ GF+pv+l + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+ XP_027062259.1 390 QQLLGCEIRNIVAVGGPKRTGEVK-VERLGEELRRIGFRPVSLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 476 ******************998887.99999*********************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence |
MLQSLLHSNS TATSASNPIN SVPIHIPLPP SRNARPSSNS SSSSSSMQSK RSSSAHHDDP 60 SSSLLKRRRS SLGPDNPSTS ADRTTDLDNE DDDVAELEAA AAAASLGGAA AGDTESSGLR 120 LLGLLLQCAE CVAMDRLDDA SNLLPEIAEL SSPFGSSAER VAAYFADALS ARIVSSYLGT 180 YAPLTIKSLT KSHNQKLFNA LQTYNSISPL IKFSHFTANQ AIFQALHGED HVHVIDLDIM 240 QGLQWPGLFH ILASRPRKIK SLKITGLGSS MELLESTGRR LSEFAGSLGL PFEFNPVEGK 300 IGNVKDLGQL RVMAGETIVI HWMHHCLYDI TGSDFGTLRP KLITIVEQDL SHGGSFLGRF 360 VEALHYYSAL FDALGDGLGT DSVERHTVEQ QLLGCEIRNI VAVGGPKRTG EVKVERLGEE 420 LRRIGFRPVS LAGNPAAQAS LLLGMFPWKG YTLVEENGCL KLGWKDLSLL TASAWQPSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-176 | GRAS family protein |