PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062004.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 257aa MW: 28443.9 Da PI: 6.1651

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	122.7	1.5e-38	50	142	5	97
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 d ++Pi+n+ rimk++lP n k+s++ k t+qec se+i f+t+ea+++c+ e+rkti ++dll+a a lGf +y+ pl+++l++yr+ e++k XP_027062004.1 50 DYLVPITNILRIMKRILPPNVKVSEEVKTTIQECLSEYIHFITGEANERCHCEQRKTIIAEDLLYAYARLGFSNYIGPLTLFLERYRQNEAAK 142 7889***********************************************************************************999765 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MGLTLISALV IREPGDAASH VATNPSASGS NVNNNNNSGT PEPYPRHHPD YLVPITNILR 60 IMKRILPPNV KVSEEVKTTI QECLSEYIHF ITGEANERCH CEQRKTIIAE DLLYAYARLG 120 FSNYIGPLTL FLERYRQNEA AKNIIHGDAS VRRTTYFPDA QGPPPLLTST PPLLPPMNLT 180 FQVGEDHQGF FINPALMLND LYFQNVRETD HGDRFDVVGS SSNLDFPALA PFSYGFYTGA 240 SSPPGSYPYG HGPNHGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-39	NF-YB family protein