PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061947.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family CO-like
Protein Properties Length: 412aa    MW: 44942.4 Da    PI: 5.502
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++ + +C+++   lC +C  + H+       H++
  XP_027061947.1  4 MCDFCGEQRSIVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44
                    6*****************************65677777765 PP

2zf-B_box17.96.6e-064688440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +C++++ +++   C + +  lC++C   +H g      H+++
  XP_027061947.1 46 LVCERCNLQPAFVRCIEEKISLCPNCDWLGHGGsntgstHKRQ 88
                    68*****************************558888888875 PP

3CCT639e-22355398144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  XP_027061947.1 355 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 398
                     899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MGYMCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNLQPAFVRC  60
IEEKISLCPN CDWLGHGGSN TGSTHKRQAV SCYSGCPSAA ELSTIWPFFL DFPLVGDSKC  120
EQIMGSMSIN EVSRDSQGAQ GKKNIQDASV AVGVTNIQNV DKSTAWTGSS MLPYDTKLQN  180
IELPAASTCA GSPKLSCFGA KGQTVCEDDS FYENFNMDEV DLSIENYDEL FGAALDNPEK  240
LFENDDIDGL FGMEISGADS NCQDAHLMEG SSMGRINGIQ PACSTAASAD SMMSCKTEPN  300
ICFARQAHSS LSFSGLTGES SAGDYQDCGA SSLLLMGEPP WCPPCPESSN LASSRSNAVM  360
RYKEKKKTRK FEKKVRYASR KARADVRRRV KGRFVKAGDA YDYDPMTPTR SY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-121CO-like family protein