PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061929.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 894aa    MW: 98424.6 Da    PI: 6.4753
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-24130231199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+        ++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  XP_027061929.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfptldyTLQPPA-QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVIFI--WNEN 221
                     99***********************9*****9666655.49************************************************..7888 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_027061929.1 222 NQLLLGIRRA 231
                     889****997 PP
2Auxin_resp120.51.3e-39256339183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t++ F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_027061929.1 256 AAHAAATNTRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    
MRLSTPGLST PPQPEEGEKK CLNAELWHAC AGPLVSLPAV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PGLPAQLICQ LHNVTMHADV ETDEVYAQMT LQPLSAQEQK DVCLLPAELG  120
TASKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPTLD YTLQPPAQEL IAKDLHGNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLIA GDSVIFIWNE NNQLLLGIRR ASRPQTIMPS  240
SVLSSDSMHI GLLAAAAHAA ATNTRFTIFY NPRASPSEFV IPLAKYAKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFSLRLKRPW PSGLPSLPGL NSSDMNINAQ LSWLRGDIGA QGIQSLNFQG  420
FGATPWMQPR LDASVLGLQP DIYQAMTAAA LQETRNFDPS KVANQSLLPF SQNTSSGSAS  480
LVQSQMLQQS QSQQNFIQSF PEDQVIAQAQ LLQQQLQRHL SCDLQQRVQP SQQLHAQIQQ  540
QQQISKNVSN FSTIESVTQS QLSPLQALGS TCQQQTFSDI NHVTSTNSSS MQSLLNSFSS  600
DGASHLLNMH GVYSLASPSS SSKRIALDSQ LSSRATQSVA ARADNMSTPD SKVSDLSTLL  660
PPVSGREFAQ FKGMTDSQNN GLFGINSDSS LMLQNGISHL INGSGESESF SVPFATSTYT  720
SALGTDLPLS SDMTTSSCMD ESVFMQSAEN VDQANPPTKT FVKVHKSGSF GRSLDISKFS  780
SYHELRSELA RMFGLEGLLE DPQRSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS  840
PLEVQQMGKE GIDLPNSAPL HRLPSSGNSC DDYMSQKETR NSMNGIPSVG SLHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein