PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027061838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YC | ||||||||
Protein Properties | Length: 243aa MW: 26044.3 Da PI: 4.84 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.4 | 3.3e-56 | 41 | 145 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_027061838.1 41 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 135 89*****998899********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_027061838.1 136 VDIVPRDEIK 145 *******975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MENNSQQAQA AAAAAAAAQT SAAAYPGQPP YHHLLQQQQQ QLQMFWNYQR QEIEQVNDFK 60 NHQLPLARIK KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWLHAE ENKRRTLQKN 120 DIAAAITRTD IFDFLVDIVP RDEIKDEAAG LGVGVGVGMA PGGIPVGSAA SGVPYYYPPL 180 GQPAPPGVMI GRPAVDPSVY VQPPPPPSQA WQSVWQTSAA DDGSYATGGG ANGGSQGNLD 240 GQG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 3e-86 | NF-YC family protein |