PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061774.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 242aa    MW: 27623.4 Da    PI: 5.4213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13154236179
                     EEEE-..-H.HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsd.vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                     f+k l+  d  lk++rl++pkk+ae++  ++++++++ l+++d++g+ W+++++y  +++s++y+l+ G ++F  +++ ++gD+
  XP_027061774.1 154 FEKLLSATDaDLKLARLIIPKKCAEAFfpDISEPRGFLLKIQDTEGKDWDFNYRYwiNGGSKMYILE-GLRDFMISKRWQAGDT 236
                     55666544415677***************99999*********************544445556666.**************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGSTSTSSSS KISCFQCEET SSSFDHFRNG WRLRSGEFAQ LCPRCASIYE EGKFCEAFHS  60
NDDGWRDCES CGKLVHCGCI VSFNAYLLLD FGGVICMECS RINFALARSR CLFLEGQPDI  120
TRQTVIEPQY RPRSSEMEVQ QISRNFECVV TPLFEKLLSA TDADLKLARL IIPKKCAEAF  180
FPDISEPRGF LLKIQDTEGK DWDFNYRYWI NGGSKMYILE GLRDFMISKR WQAGDTGQYP  240
IS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.12e-33B3 family protein