PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061607.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 464aa    MW: 53059 Da    PI: 7.1411
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061607.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.85.2e-118444641374
            GRAS   1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal............ 81 
                     +++lL++cAe +ss +d + a++l++ l  +++p+gd+++Rl++ ft+AL+ rl+r  +++l ++lp ++++  +  +++++l            
  XP_027061607.1  44 MRQLLISCAELMSSsSDSSSAHRLITILMANSNPYGDSTERLIHQFTRALSLRLNRyATTTLLNTLPNTQQHLGHPLNNTFFLthrhhhhpttsf 138
                     589*******998847888*************************************7788888999888888666333333335678899***** PP

            GRAS  82 .....................................klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg 138
                                                            +++v+P+++fs+ltaNqaIl+a+++  e++Hi+Df+i++GlQWp+++qa+ +R  +
  XP_027061607.1 139 nsspvnsanaasfsaasinhipqvvesdeqallqtayLSLNQVTPFIRFSQLTANQAILDAIDQGqEAIHILDFNIMHGLQWPPFMQAIVER-YP 232
                     *****************************9999765444***********************876599***********************9.89 PP

            GRAS 139 ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                      pslRiTg g+    + e+l++tg+rLakfA++lg++f+f++l+ +  ed  +  L     + pgE+laVn+v+ lhrll+++  l+     +L+
  XP_027061607.1 233 RPSLRITGTGN----DLETLRRTGDRLAKFAHSLGLRFQFHPLHLH-NEDDPIAVLssavVLLPGESLAVNCVHYLHRLLKDRDGLRL----FLH 318
                     9**********....***************************8444.33333444411115666****************77777776....*** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      +k ++P+vv+++e+ea+hn++ Fl+rf+eal++y+a+fdslea+lp++s+er +vE++++greiv++va+ g++rrerhe++++W+ +l+++GF
  XP_027061607.1 319 RIKVMNPRVVTMAEREANHNHPLFLQRFVEALDHYAAVFDSLEATLPPNSRERLNVEQVWFGREIVDIVAADGDHRRERHERFRSWELMLRSCGF 413
                     *********************************************************************************************** PP

            GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++vpls +a +qaklllr ++ s+gy+++  ++s++lgW+++ L+svS+Wr
  XP_027061607.1 414 NNVPLSPFALSQAKLLLRLHYpSEGYQLHILNDSFFLGWQNQLLYSVSSWR 464
                     **************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MLGSFGSSSH EVEEDEPSPP EHHHVHYHQI QQYRSFTSPT LVHMRQLLIS CAELMSSSSD  60
SSSAHRLITI LMANSNPYGD STERLIHQFT RALSLRLNRY ATTTLLNTLP NTQQHLGHPL  120
NNTFFLTHRH HHHPTTSFNS SPVNSANAAS FSAASINHIP QVVESDEQAL LQTAYLSLNQ  180
VTPFIRFSQL TANQAILDAI DQGQEAIHIL DFNIMHGLQW PPFMQAIVER YPRPSLRITG  240
TGNDLETLRR TGDRLAKFAH SLGLRFQFHP LHLHNEDDPI AVLSSAVVLL PGESLAVNCV  300
HYLHRLLKDR DGLRLFLHRI KVMNPRVVTM AEREANHNHP LFLQRFVEAL DHYAAVFDSL  360
EATLPPNSRE RLNVEQVWFG REIVDIVAAD GDHRRERHER FRSWELMLRS CGFNNVPLSP  420
FALSQAKLLL RLHYPSEGYQ LHILNDSFFL GWQNQLLYSV SSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-125GRAS family protein