PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061520.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 456aa MW: 49467.1 Da PI: 6.9957

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111	1.7e-34	52	154	2	109
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++++ ++ +++s ++s+++ ++a+ks a XP_027061520.1 52 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELPAWHP---TTGSVAANTSFEQDQQAQKSRAD 143 79**************************************************************66666...22333333333333333333332 PP TCP 97 skksqksaasaln 109 + ++q++++ l XP_027061520.1 144 NLQNQQQQH--LG 154 222222222..22 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MGENFHHHHQ LQQQQQQQPT TRQSSSRLSG LRNSTGAGEI VEVQGGHIVR STGRKDRHSK 60 VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKSAID ELAELPAWHP 120 TTGSVAANTS FEQDQQAQKS RADNLQNQQQ QHLGVTHHDD VVGAAIAAGP SSKRVMPMLG 180 SENAQQGLHQ TDSAANPSGN SSSFLPPSLD SDSIADTIKS FFPMGASAEA NSSAMQFQSF 240 PPPDLLSRTS SHPQDLRLSL QSFQDPILLH HHNQQQAQHH QNHPTSQHPE QGEALFSGNT 300 QLGGYDAAAW SEHHQQPAEL GRFHQRLSAW NASGDGGGAG AGGYLFNSQA TPQPFLQQLF 360 GQNQLFSQRG PLQSSNTPSI RAWMDPSAIS IATADHHIPH HQAVLPIYPS SISGIGFAPG 420 VGGFSGFRIP ARIQGEEEEH DGISDKPSSA SSDSRH

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MGENFHHHHQ LQQQQQQQPT TRQSSSRLSG LRNSTGAGEI VEVQGGHIVR STGRKDRHSK  60
VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKSAID ELAELPAWHP  120
TTGSVAANTS FEQDQQAQKS RADNLQNQQQ QHLGVTHHDD VVGAAIAAGP SSKRVMPMLG  180
SENAQQGLHQ TDSAANPSGN SSSFLPPSLD SDSIADTIKS FFPMGASAEA NSSAMQFQSF  240
PPPDLLSRTS SHPQDLRLSL QSFQDPILLH HHNQQQAQHH QNHPTSQHPE QGEALFSGNT  300
QLGGYDAAAW SEHHQQPAEL GRFHQRLSAW NASGDGGGAG AGGYLFNSQA TPQPFLQQLF  360
GQNQLFSQRG PLQSSNTPSI RAWMDPSAIS IATADHHIPH HQAVLPIYPS SISGIGFAPG  420
VGGFSGFRIP ARIQGEEEEH DGISDKPSSA SSDSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-86	TCP family protein