PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061317.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 499aa MW: 55028.9 Da PI: 7.0304

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.5e-16	321	367	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellPk+ K +Ka++L +A+eY+ksLq XP_027061317.1 321 VHNLSERRRRDRINEKMRALQELLPKS-----NKTDKASMLDEAIEYMKSLQ 367 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MDNELVELLW ENGQIVLHPQ SHHHHHPKPG TADQQENQSR QINKHNHDQS MSRGSTGGGS 60 CQNQVTSLIQ DTETVSWIDD PFDKEFTSDF LSEFPISNPV EQGPHEDDKF KKFGISQDLH 120 NHPVQLPNDK PSDVINSLPP RFHNFDSAQP NHSHLPRAAN APLSAMADLR SSSDGVSNRT 180 LGGEVREYSS AKTVGTSHCG SNLVVNDTDT SRVSSGGIAD HRGFSGAMAK DHRVGKMSSQ 240 SDRLQTDQTE ETAITSSSSD GSETSFGRTC NQSTGTNSHK RKSRDAEDSE CQSKAAELES 300 AARKKPAVKS GSSRKSRAAE VHNLSERRRR DRINEKMRAL QELLPKSNKT DKASMLDEAI 360 EYMKSLQLQL QMMWMGSGMA PMMFPGVQHY MPRLGMGIGP LAMPSIHSQM HLPRLPLLDQ 420 ATIPNQAALC HQTTMFNPMN YHTQLQNSKL SEQYANYMAF HPLQNASQQL NVFGFGPNTA 480 QQHNHSLAPS GNSNGPSVG

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MDNELVELLW ENGQIVLHPQ SHHHHHPKPG TADQQENQSR QINKHNHDQS MSRGSTGGGS  60
CQNQVTSLIQ DTETVSWIDD PFDKEFTSDF LSEFPISNPV EQGPHEDDKF KKFGISQDLH  120
NHPVQLPNDK PSDVINSLPP RFHNFDSAQP NHSHLPRAAN APLSAMADLR SSSDGVSNRT  180
LGGEVREYSS AKTVGTSHCG SNLVVNDTDT SRVSSGGIAD HRGFSGAMAK DHRVGKMSSQ  240
SDRLQTDQTE ETAITSSSSD GSETSFGRTC NQSTGTNSHK RKSRDAEDSE CQSKAAELES  300
AARKKPAVKS GSSRKSRAAE VHNLSERRRR DRINEKMRAL QELLPKSNKT DKASMLDEAI  360
EYMKSLQLQL QMMWMGSGMA PMMFPGVQHY MPRLGMGIGP LAMPSIHSQM HLPRLPLLDQ  420
ATIPNQAALC HQTTMFNPMN YHTQLQNSKL SEQYANYMAF HPLQNASQQL NVFGFGPNTA  480
QQHNHSLAPS GNSNGPSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	331	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	6e-41	bHLH family protein