PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061315.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 509aa MW: 56493.8 Da PI: 6.7713

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.6e-16	346	392	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellPk+ K +Ka++L +A+eY+ksLq XP_027061315.1 346 VHNLSERRRRDRINEKMRALQELLPKS-----NKTDKASMLDEAIEYMKSLQ 392 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MNPCFPDWNF GAEFPEPILK NKPLGMDNEL VELLWENGQI VLHPQSHHHH HPKPGTADQQ 60 ENQSRQINKH NHDQSMSRGS TGGGSCQNQV TSLIQDTETV SWIDDPFDKE FTSDFLSEFP 120 ISNPVEQGPH EDDKFKKFGI SQDLHNHPVQ LPNDKPSDVI NSLPPRFHNF DSAQPNHSHL 180 PRAANAPLSA MADLRSSSDG VSNRTLGGEV REYSSAKTVG TSHCGSNLVV NDTDTSRVSS 240 GGIADHRGFS GAMAKDHRVG KMSSQSDRLQ TDQTEETAIT SSSSDGSETS FGRTCNQSTG 300 TNSHKRKSRD AEDSECQSKA AELESAARKK PAVKSGSSRK SRAAEVHNLS ERRRRDRINE 360 KMRALQELLP KSNKTDKASM LDEAIEYMKS LQLQLQMMWM GSGMAPMMFP GVQHYMPRLG 420 MGIGPLAMPS IHSQMHLPRL PLLDQATIPN QAALCHQTTM FNPMNYHTQL QNSKLSEQYA 480 NYMAFHPLQN ASQDICDGSY AVVLWHCSS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MNPCFPDWNF GAEFPEPILK NKPLGMDNEL VELLWENGQI VLHPQSHHHH HPKPGTADQQ  60
ENQSRQINKH NHDQSMSRGS TGGGSCQNQV TSLIQDTETV SWIDDPFDKE FTSDFLSEFP  120
ISNPVEQGPH EDDKFKKFGI SQDLHNHPVQ LPNDKPSDVI NSLPPRFHNF DSAQPNHSHL  180
PRAANAPLSA MADLRSSSDG VSNRTLGGEV REYSSAKTVG TSHCGSNLVV NDTDTSRVSS  240
GGIADHRGFS GAMAKDHRVG KMSSQSDRLQ TDQTEETAIT SSSSDGSETS FGRTCNQSTG  300
TNSHKRKSRD AEDSECQSKA AELESAARKK PAVKSGSSRK SRAAEVHNLS ERRRRDRINE  360
KMRALQELLP KSNKTDKASM LDEAIEYMKS LQLQLQMMWM GSGMAPMMFP GVQHYMPRLG  420
MGIGPLAMPS IHSQMHLPRL PLLDQATIPN QAALCHQTTM FNPMNYHTQL QNSKLSEQYA  480
NYMAFHPLQN ASQDICDGSY AVVLWHCSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	356	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-41	bHLH family protein