PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061119.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 448aa    MW: 50302.2 Da    PI: 4.7597
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.32.1e-88454412373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkf 93 
                     ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r++r +++ ++   ++s+++     + +++++l  ++++ P+++f
  XP_027061119.1  45 EKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLKALISRVSRVCPTPMNLNgNSSPQR-----RLMTVTELagYVDLIPWHRF 134
                     689***************************************************8877776552333333.....22223333449********* PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                     ++ + N+aI +a++g ++vHi+D++i++++QWp+L+++La+Rpegpps+Ri + +   ++    + + ee+g+rL +fA+  +vpfefnv+    
  XP_027061119.1 135 GFCASNSAIFKAIQGYNKVHILDLSITHCMQWPTLIDTLAKRPEGPPSVRISVPSWRPPVpplLNVSSEEVGQRLGNFAKFKDVPFEFNVIgeqp 229
                     ****************************************************988866668899999**************************** PP

            GRAS 182 ..............vakrledl..........eleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadh 248
                                          l          ++++L+++ +Eal++n++  l +l+de+ + +s    +rd +L+ +k+l+P +++vv++++++
  XP_027061119.1 230 tvpsspcistleysS------LqydfllnqvlNPSTLKLEDDEALVINCQNWLRYLPDEQNNGASqeisCRDIFLNRIKDLNPCIITVVDEDSEL 318
                     988777655444320......12222333444777779999****************9988766656779************************* PP

            GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                     + +++  r++ +++y +  fd+le+ l++++++ri +E+  +g +i+n++a eg++r+er e+  k ++r+++ GF +vp+ e++ +++k ll +
  XP_027061119.1 319 DVSNLTSRITTCFNYLWIPFDALETFLSKDNSQRIEYEAD-IGHKIENIIAFEGTQRIERLESGTKFSQRMRNNGFFSVPFCEETISEVKFLLDE 412
                     ****************************************.****************************************************** PP

            GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++  g+ +++e++ lvl+Wk+++ v ++aW
  XP_027061119.1 413 HA-SGWGMKKEDDMLVLTWKGHNSVYATAW 441
                     **.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    
MKTELRGNNT PISLQNPNLF DSPQSSILSG ALKGCLGSLD GACIEKLLLH CASALESNDV  60
TLAQQVMWVL NNVASPVGDP NQRLTSWFLK ALISRVSRVC PTPMNLNGNS SPQRRLMTVT  120
ELAGYVDLIP WHRFGFCASN SAIFKAIQGY NKVHILDLSI THCMQWPTLI DTLAKRPEGP  180
PSVRISVPSW RPPVPPLLNV SSEEVGQRLG NFAKFKDVPF EFNVIGEQPT VPSSPCISTL  240
EYSSLQYDFL LNQVLNPSTL KLEDDEALVI NCQNWLRYLP DEQNNGASQE ISCRDIFLNR  300
IKDLNPCIIT VVDEDSELDV SNLTSRITTC FNYLWIPFDA LETFLSKDNS QRIEYEADIG  360
HKIENIIAFE GTQRIERLES GTKFSQRMRN NGFFSVPFCE ETISEVKFLL DEHASGWGMK  420
KEDDMLVLTW KGHNSVYATA WVPCGFDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-126GRAS family protein