PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061084.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 211aa MW: 23463 Da PI: 9.6255

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.5	7e-42	87	164	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adls+ak+yhrrh+vCe+h+ka+vv+v g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a XP_027061084.1 87 CCQAEKCTADLSDAKQYHRRHRVCEHHAKAQVVIVGGIRQRFCQQCSRFHELAEFDEAKRSCRRRLAGHNERRRKNSA 164 6**************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MDANHIPPKI KDKVIKREAK TQMQQQADDQ SSMEDDDFLS STATTDQEDR SKKKACGINN 60 SSNNGGSSGK KGSNTGGGTS GASSMKCCQA EKCTADLSDA KQYHRRHRVC EHHAKAQVVI 120 VGGIRQRFCQ QCSRFHELAE FDEAKRSCRR RLAGHNERRR KNSADSSQAE GSSRKGTGSQ 180 MKEIVCGQVD DRGRIQITVQ ENANYKHFQI R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	6e-48	SBP family protein