PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061072.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 635aa MW: 68687.2 Da PI: 6.5563

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	3e-31	279	336	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk ers +++++ei+Y+g+H+h+k XP_027061072.1 279 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 336 8**************************************.*************85 PP
2	WRKY	107.1	8.6e-34	451	509	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct+agCpv+k+ver+++dpk+v++tYeg+Hnh+ XP_027061072.1 451 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHAGCPVRKHVERASHDPKAVITTYEGKHNHD 509 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MEEASSLQSR YHSPHAFELL QQQQVEEQQS GACSNVEMDG RLTSSLRRVR DGNGNGNGNY 60 SEAAAAYHHS AAAAAGGGGA KYKLMSPAKL PISRSPCTLT IPPGLSPTSF LESPVLLSNI 120 KAEPSPTTGT FSMPQMMQGC SGTSGFSYLT NCSSLNTVNK TNSCNFEFQF HADSGDAAGL 180 RPIGLAVSSG LVQQHNKSLG QVPDSGLPQS LVSSSLVKHE VVMAKESNFS APTTISDSAT 240 IAVDSDVLNQ KNHPNISNQV SNSDSKDTTS SVANDRSSDD GYNWRKYGQK LVKGSEFPRS 300 YYKCTYPNCE VKKIFERSPE GQITEIVYKG SHDHPKPQPS RRFTPGALLS IQEEKFDKDS 360 TFTGQEDKLN VNSQNTSVEP NSTPLPSPQQ ENDDGLDGTL SKLQCVNDEI DEDDPFSKRR 420 KLDGSLDVTP VVKPIREPRV VVQTVSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTHA 480 GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PTARTSSHEM AGPATMGAMS RIRSEEDDPL 540 SLDLGVGISY GAEHRPDAQL QMLNSEPLQS QVRAAASTRM VVQASTLPAC YGVVNGGITL 600 YGSKENLDEG GGFGTAPLRS SNQCPQNLGR IILGP

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MEEASSLQSR YHSPHAFELL QQQQVEEQQS GACSNVEMDG RLTSSLRRVR DGNGNGNGNY  60
SEAAAAYHHS AAAAAGGGGA KYKLMSPAKL PISRSPCTLT IPPGLSPTSF LESPVLLSNI  120
KAEPSPTTGT FSMPQMMQGC SGTSGFSYLT NCSSLNTVNK TNSCNFEFQF HADSGDAAGL  180
RPIGLAVSSG LVQQHNKSLG QVPDSGLPQS LVSSSLVKHE VVMAKESNFS APTTISDSAT  240
IAVDSDVLNQ KNHPNISNQV SNSDSKDTTS SVANDRSSDD GYNWRKYGQK LVKGSEFPRS  300
YYKCTYPNCE VKKIFERSPE GQITEIVYKG SHDHPKPQPS RRFTPGALLS IQEEKFDKDS  360
TFTGQEDKLN VNSQNTSVEP NSTPLPSPQQ ENDDGLDGTL SKLQCVNDEI DEDDPFSKRR  420
KLDGSLDVTP VVKPIREPRV VVQTVSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTHA  480
GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PTARTSSHEM AGPATMGAMS RIRSEEDDPL  540
SLDLGVGISY GAEHRPDAQL QMLNSEPLQS QVRAAASTRM VVQASTLPAC YGVVNGGITL  600
YGSKENLDEG GGFGTAPLRS SNQCPQNLGR IILGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	1e-156	WRKY family protein