PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061061.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 356aa MW: 39825 Da PI: 4.977

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.4e-13	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed +l+ +++ G +W++ ++ g+ R++k+c++rw +yl XP_027061061.1 16 KGPWSPAEDYRLISFIQKQGHANWRALPKQAGLLRCGKSCRLRWINYL 63 79****************************99**********97 PP
2	Myb_DNA-binding	55.7	1.2e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l XP_027061061.1 69 RGNFTPEEEQTIINLHNALGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRGRAPCCD KSKVKKGPWS PAEDYRLISF IQKQGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPEEEQTI INLHNALGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLVI 120 GNDDANCHQK IETSNSFTSY SASPSPSSSS CISYGELNTE KGPGGDQEGL HSKVDEQQEP 180 CISPTHPNAP NLENFGQPAE ETCSLDSCIN SKASPEVRKT TTEEPKEMAQ DGNTMEIPLE 240 PDADFWNFLD GLDPMDKPTE CQPQQEHGVS QSSNFGENHQ EDVHEYKRWL RYLENELGLV 300 GGNDGECPQK GAGAEQQQQQ LVTDTSDDEM MSRPEFDPAA MAYFSMWPSS PQNFGI

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRGRAPCCD KSKVKKGPWS PAEDYRLISF IQKQGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEQTI INLHNALGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLVI  120
GNDDANCHQK IETSNSFTSY SASPSPSSSS CISYGELNTE KGPGGDQEGL HSKVDEQQEP  180
CISPTHPNAP NLENFGQPAE ETCSLDSCIN SKASPEVRKT TTEEPKEMAQ DGNTMEIPLE  240
PDADFWNFLD GLDPMDKPTE CQPQQEHGVS QSSNFGENHQ EDVHEYKRWL RYLENELGLV  300
GGNDGECPQK GAGAEQQQQQ LVTDTSDDEM MSRPEFDPAA MAYFSMWPSS PQNFGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	3e-77	MYB family protein