PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060933.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 734aa MW: 85351.3 Da PI: 8.4305

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.5e-23	69	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAkevGF +++s+ +k ng+ ++r f+Cs egkre++k++ + r +r+etr +C ak+kv+ +++gk+++ +l eHnH l+ XP_027060933.1 69 NFYLAYAKEVGFGIKRSSFHKD-SNGKLMDRVFCCSAEGKREKDKRD-LNVRAPRPETRFNCSAKMKVNSRQTGKFRICQLIIEHNHYLS 156 6**************98887.8888*************999.999**********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MDAKASIETE VSSCRRLDFD KVDQITNDEV STPPVLNVIK DINKIHTLIP FDLIPKMGME 60 FESEEDAYNF YLAYAKEVGF GIKRSSFHKD SNGKLMDRVF CCSAEGKREK DKRDLNVRAP 120 RPETRFNCSA KMKVNSRQTG KFRICQLIIE HNHYLSSPNK SHLHRSHRKI NSIHAAEIDM 180 AYHVGIAPKV SHELMALQVG GRENLGFIPE DYRNYLRSKR TIQMEVGDTG GVLEYLQKMQ 240 LEDPNFFYAI QVDQDDLITN IFWTDGLMRA DYASFGDVVC FDTTYRKNNE GRPFALFVGV 300 NNHKQTAIFG AALLYDETAS TFEWLFDTFA RAMSGKKPNT ILTDQDAAMA KGLISTWPET 360 RHRLCIWHIF QNAAIHLSHV FESFKQFAND FSKCVYDFDE EEDFISEWNT MLKKYGLEDN 420 DWLKRMFEIK EKWALVYGRE TFCADMTTTQ RSESMNSVIK RYVTYKNKFH EFFNHFGRLV 480 DDRRYKELKT DFRAYMSTPV LPFDVDVLKQ AASVYTPEVF KWFEIEWGKS YDCGIITYSE 540 VGTVIEYKIT PKGRKNYHMV RFDSIGDQIS CSCKKFEFSG ILCSHSLKVL NIRNIMKIPS 600 QYIIKRWTNK AKAGYVKDHN CCNINNDLDP KVLFTKRYRD LCRLYTQLVT KAAQTEETYK 660 IAKEGLLKIL DLVDARLHQE GSSNEMSNAT KVSNPTNNTT NASGINIKAY RRYYKYCIYE 720 VQYATAWITR GKYK

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MDAKASIETE VSSCRRLDFD KVDQITNDEV STPPVLNVIK DINKIHTLIP FDLIPKMGME  60
FESEEDAYNF YLAYAKEVGF GIKRSSFHKD SNGKLMDRVF CCSAEGKREK DKRDLNVRAP  120
RPETRFNCSA KMKVNSRQTG KFRICQLIIE HNHYLSSPNK SHLHRSHRKI NSIHAAEIDM  180
AYHVGIAPKV SHELMALQVG GRENLGFIPE DYRNYLRSKR TIQMEVGDTG GVLEYLQKMQ  240
LEDPNFFYAI QVDQDDLITN IFWTDGLMRA DYASFGDVVC FDTTYRKNNE GRPFALFVGV  300
NNHKQTAIFG AALLYDETAS TFEWLFDTFA RAMSGKKPNT ILTDQDAAMA KGLISTWPET  360
RHRLCIWHIF QNAAIHLSHV FESFKQFAND FSKCVYDFDE EEDFISEWNT MLKKYGLEDN  420
DWLKRMFEIK EKWALVYGRE TFCADMTTTQ RSESMNSVIK RYVTYKNKFH EFFNHFGRLV  480
DDRRYKELKT DFRAYMSTPV LPFDVDVLKQ AASVYTPEVF KWFEIEWGKS YDCGIITYSE  540
VGTVIEYKIT PKGRKNYHMV RFDSIGDQIS CSCKKFEFSG ILCSHSLKVL NIRNIMKIPS  600
QYIIKRWTNK AKAGYVKDHN CCNINNDLDP KVLFTKRYRD LCRLYTQLVT KAAQTEETYK  660
IAKEGLLKIL DLVDARLHQE GSSNEMSNAT KVSNPTNNTT NASGINIKAY RRYYKYCIYE  720
VQYATAWITR GKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-137	FAR1 family protein