PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060773.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 375aa MW: 41907.8 Da PI: 6.7331

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.3	2.4e-06	40	72	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ + +lC C ++H XP_027060773.1 40 KPCDSCKATSASVFCRADXAFLCLACDXKIHAA 72 67****99*******************54 PP
2	zf-B_box	23.5	1.1e-07	82	127	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC C +H+ H+++p+ XP_027060773.1 82 VWVCEVCEQXPASVTCKADAAALCXPCDRDIHSAxplarrHERIPI 127 689*****************************66899999999886 PP
3	CCT	66.7	6.7e-23	312	356	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea+ lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae XP_027060773.1 312 REARXLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 356 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MPQQLWQKPY ALETSRHSDF QTPREWRKNG CAEGWSLTAK PCDSCKATSA SVFCRADXAF 60 LCLACDXKIH AANKLASRHG RVWVCEVCEQ XPASVTCKAD AAALCXPCDR DIHSAXPLAR 120 RHERIPIXPF FDSASAARCT GASDEKCLLD LGSEAEEAEA ASWLLPNPNC NKDLEPDSPE 180 YKTADYLFTD MDPYLDMDLI SSDQKPHVVQ YQNHHHNHVH QQHNSDGVVP VQNKNDPTHL 240 PGPVVDGFPT YEMDFAGSKS FVYNFSSQSI SQSVSSSSME VGVVPDHNAM ADVSNNLSRS 300 DAVTNPVSGV DREARXLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRAEXEIE 360 SLIVADASYG VVPTY

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MPQQLWQKPY ALETSRHSDF QTPREWRKNG CAEGWSLTAK PCDSCKATSA SVFCRADXAF  60
LCLACDXKIH AANKLASRHG RVWVCEVCEQ XPASVTCKAD AAALCXPCDR DIHSAXPLAR  120
RHERIPIXPF FDSASAARCT GASDEKCLLD LGSEAEEAEA ASWLLPNPNC NKDLEPDSPE  180
YKTADYLFTD MDPYLDMDLI SSDQKPHVVQ YQNHHHNHVH QQHNSDGVVP VQNKNDPTHL  240
PGPVVDGFPT YEMDFAGSKS FVYNFSSQSI SQSVSSSSME VGVVPDHNAM ADVSNNLSRS  300
DAVTNPVSGV DREARXLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRAEXEIE  360
SLIVADASYG VVPTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	3e-93	CO-like family protein