PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.50_2s0006.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family NF-YC
Protein Properties Length: 236aa    MW: 26150.8 Da    PI: 7.7944
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.50_2s0006.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC36.41.1e-111081742086
                NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           lP a +++i+ +d+dv+++s ++ vl+++   lf+  l+ +++  a +nkrrt+k +d++ av + 
  Bobra.50_2s0006.1.p 108 FLPHALVRRIMCMDPDVQRVSGDTIVLMARVACLFLDLLAEKTFSAACQNKRRTIKFQDVERAVRSD 174
                          5899**************************99899888999**********************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MAKRAPTAYF IFSEEKRAEA RAECLQDATT EKVSVAVVAK KIGEKWRALP EEERKRYKEL  60
AAQKSVEASA IHLIEEASED CRELVEGNQE SRPGEKRKHN QDSNPPSFLP HALVRRIMCM  120
DPDVQRVSGD TIVLMARVAC LFLDLLAEKT FSAACQNKRR TIKFQDVERA VRSDQRLVEI  180
GLKDVLSTED LFAAARSEAV GGKENEPGLK TGNSKCVGKG TQPITAFFSM SEPVP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.37e-09NF-YC family protein