PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.43_1s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | MYB | ||||||||
Protein Properties | Length: 183aa MW: 20642.8 Da PI: 8.7824 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.9e-09 | 4 | 35 | 15 | 47 |
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47 +v+ lG g W+ I++ ++ gR +kqc++rw++ Bobra.43_1s0005.1.p 4 LVRDLGEGKWSCISKFFP-GRIGKQCRERWFNQ 35 7999**************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.5e-18 | 71 | 111 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE+ +lvda++ lG++ W+ Ia+++ gRt++ +k++w+ Bobra.43_1s0005.1.p 71 AWTEEEEVKLVDAHRALGNR-WAEIAKCIV-GRTENAVKNHWN 111 8*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MDRLVRDLGE GKWSCISKFF PGRIGKQCRE RWFNQLRPTA RIINLVITST VIRTKIPGEN 60 LFVCRTSGVD AWTEEEEVKL VDAHRALGNR WAEIAKCIVG RTENAVKNHW NATIRRKDSG 120 SFYVYIVGLT FEDDMCSHRP PPPCWCSTAN ASMTCSLVVG FNGFENMHVM HVAPLPHGPP 180 RN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-30 | MYB family protein |